Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Genome Watch
  • Published:

Fitting the niche by genomic adaptation

Abstract

Studying microbial genomics has shown that the genomes of bacteria are extremely dynamic in evolutionary terms. Many research groups have linked the adaptation of an organism to a niche to large changes in genome size and content. A number of recent papers have underlined the degree to which the genomes of different organisms are a reflection of the opportunities and constraints imposed by their chosen niche.

This is a preview of subscription content, access via your institution

Relevant articles

Open Access articles citing this article.

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

References

  1. Gil, R . et al. The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proc. Natl Acad. Sci. USA 100, 9388–9393 (2003).

    Article  CAS  Google Scholar 

  2. Akman, L . et al. Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nature Genet. 32, 402–407 (2002).

    Article  CAS  Google Scholar 

  3. Parkhill, J . et al. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nature Genet. 35, 32–40 (2003).

    Article  Google Scholar 

  4. Palenik, B . et al. The genome of a motile marine Synechococcus. Nature 424, 1037–1042 (2003).

    Article  CAS  Google Scholar 

  5. Dufresne, A . et al. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc. Natl Acad. Sci. USA 100, 10020–10025 (2003).

    Article  CAS  Google Scholar 

  6. Rocap, G . et al. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424, 1042–1047 (2003).

    Article  CAS  Google Scholar 

  7. Read, T. D . et al. Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae. Nucleic Acids Res. 31, 2134–2147 (2003).

    Article  CAS  Google Scholar 

  8. Nelson, K. E . et al. Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83. J. Bacteriol. 185, 5591–5601 (2003).

    Article  CAS  Google Scholar 

  9. Buell, C. R . et al. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl Acad. Sci. USA 100, 10181–10186 (2003).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Thomson, N., Bentley, S., Holden, M. et al. Fitting the niche by genomic adaptation. Nat Rev Microbiol 1, 92–93 (2003). https://doi.org/10.1038/nrmicro756

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1038/nrmicro756

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing