Sequencing-based technologies for RNA discovery are playing a key role in deciphering the transcriptome and hold the potential to provide us with a census of RNAs and their functions.
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References
Liang, F. et al. Nat. Genet. 25, 239–240 (2000).
Carninci, P. et al. Science 309, 1559–1563 (2005).
ENCODE Project Consortium et al. Nature 447, 799–816 (2007).
Carninci, P. et al. Genome Res. 13, 1273–1289 (2003).
Kapranov, P. et al. Science 316, 1484–1488 (2007).
Harbers, M. & Carninci, P. Nat. Methods 2, 495–502 (2005).
Sultan, M. et al. Science 321, 956–960 (2008).
Pan, Q., Shai, O., Lee, L.J., Frey, B.J. & Blencowe, B.J. Nat. Genet. 40, 1413–1415 (2008).
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. & Wold, B. Nat. Methods 5, 621–628 (2008).
Cloonan, N. et al. Nat. Methods 5, 613–619 (2008).
Tang, F. et al. Nat. Methods 6, 377–382 (2009).
Faulkner, G.J. et al. Nat. Genet. 41, 563–571 (2009).
Fejes-Toth, K. et al. Nature 457, 1028–1032 (2009).
Carninci, P. et al. Nat. Genet. 38, 626–635 (2006).
Turner, D.J., Keane, T.M., Sudbery, I. & Adams, D.J. Mamm. Genome 20, 327–338 (2009).
Djebali, S. et al. Nat. Methods 5, 629–635 (2008).
Salehi-Ashtiani, K. et al. Nat. Methods 5, 597–600 (2008).
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Carninci, P. Is sequencing enlightenment ending the dark age of the transcriptome?. Nat Methods 6, 711–713 (2009). https://doi.org/10.1038/nmeth1009-711
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DOI: https://doi.org/10.1038/nmeth1009-711
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