Abstract
Development in vertebrates follows distinctive pathways of cellular differentiation. Starting from the zygote, newly formed cells continually differentiate until they reach a final mature fate. Whether differentiating into a neuron, a hepatocyte or a myofibril, every normal cell, with the exception of developing lymphocytes, carries the same genetic information enclosed within its nucleus. To acquire distinct cellular identities, cells need to control gene expression in a very regulated way. Genes encoding factors required for identity at a particular developmental stage need to be appropriately activated, whereas genes required for identity during the previous developmental stage are often silenced. Moreover, once a cell becomes terminally differentiated, 'heritable' gene expression must be maintained in all daughter cells and, thus, faithfully recapitulated after each cellular division.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$209.00 per year
only $17.42 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
References
Ahmad, K. & Henikoff, S. Epigenetic consequences of nucleosome dynamics. Cell 111, 281–284 (2002).
Reynaud, C.A., Aoufouchi, S., Faili, A. & Weill, J.-C. What role for AID: mutator, or assembler of the Ig-mutasome? Nat. Immunol. 4, 631–638 (2003).
Ansel, K.M., Lee, D.U. & Rao, A. An epigenetic view of helper T cell differentiation. Nat. Immunol. 4, 616–623 (2003).
Smale, S.T. The establishment and maintenance of gene silencing during lymphocyte development. Nat. Immunol. 4, 607–615 (2003).
Krangel, M.S. Gene segment selection during V(D)J recombination: accessibility and beyond. Nat. Immunol. 4, 624–630 (2003).
Strahl, B.D. & Allis, C.D. The language of covalent histone modifications. Nature 403, 41–45 (2000).
Chen, J. Analysis of gene function in lymphocytes by RAG-2 deficient blastocyst complementation. Adv. Immunol. 62, 31–59 (1996).
Bassing, C.H., Swat, W. & Alt, F.W. The mechanism and regulation of chromosomal V(D)J recombination. Cell 109 Suppl, S45–55 (2002).
Fugmann, S.D., Lee, A.I., Shockett, P.E., Villey, I.J. & Schatz, D.G. The RAG proteins and V(D)J recombination: complexes, ends, and transposition. Annu. Rev. Immunol. 18, 495–527 (2000).
Manis, J.P., Tian, M. & Alt, F.W. Mechanism and control of class-switch recombination. Trends Immunol. 23, 31–39 (2002).
Honjo, T., Kinoshita, K. & Muramatsu, M. Molecular mechanism of class switch recombination: linkage with somatic hypermutation. Annu. Rev. Immunol. 20, 165–196 (2002).
Fugmann, S.D. & Schatz, D.G. RNA AIDs DNA. Nat. Immunol. 4, 429–430 (2003).
Storb, U. & Stavnezer, J. Immunoglobulin genes: generating diversity with AID and UNG. Curr. Biol. 12, R725–727 (2002).
Stanhope-Baker, P., Hudson, K.M., Shaffer, A.L., Constantinescu, A. & Schlissel, M.S. Cell type-specific chromatin structure determines the targeting of V(D)J recombinase activity in vitro. Cell 85, 887–897 (1996).
Sleckman, B.P., Bardon, C.G., Ferrini, R., Davidson, L. & Alt, F.W. Function of the TCRα enhancer in αβ and γδ T cells. Immunity 7, 505–515 (1997).
Mostoslavsky, R. et al. κ-chain monoallelic demethylation and the establishment of allelic exclusion. Genes Dev. 12, 1801–1811 (1998).
Hernandez-Munain, C., Sleckman, B.P. & Krangel, M.S. A developmental switch from TCRδ enhancer to TCRα enhancer function during thymocyte maturation. Immunity 10, 723–733 (1999).
Yancopoulos, G.D., Blackwell, T.K., Suh, H., Hood, L. & Alt, F.W. Introduced T cell receptor variable region gene segments recombine in pre-B cells: evidence that B and T cells use a common recombinase. Cell 44, 251–259 (1986).
Hempel, W.M., Leduc, I., Mathieu, N., Tripathi, R.K. & Ferrier, P. Accessibility control of V(D)J recombination: lessons from gene targeting. Adv. Immunol. 69, 309–352 (1998).
Martin, A. & Scharff, M.D. AID and mismatch repair in antibody diversification. Nat. Rev. Immunol. 2, 605–14. (2002).
Hesslein, D.G. & Schatz, D.G. Factors and forces controlling V(D)J recombination. Adv. Immunol. 78, 169–232 (2001).
Engel, J.D. & Tanimoto, K. Looping, linking, and chromatin activity: new insights into β-globin locus regulation. Cell 100, 499–502 (2000).
Khamlichi, A.A., Pinaud, E., Decourt, C., Chauveau, C. & Cogne, M. The 3′ IgH regulatory region: a complex structure in a search for a function. Adv. Immunol. 75, 317–345 (2000).
Redon, C. et al. Histone H2A variants H2AX and H2AZ. Curr. Opin. Genet. Dev. 12, 162–169 (2002).
Chen, H.T. et al. Response to RAG-mediated VDJ cleavage by NBS1 and γ-H2AX. Science 290, 1962–1965 (2000).
Petersen, S. et al. AID is required to initiate Nbs1/γ-H2AX focus formation and mutations at sites of class switching. Nature 414, 660–5. (2001).
Celeste, A. et al. Genomic instability in mice lacking histone H2AX. Science 296, 922–927 (2002).
Paull, T.T. New glimpses of an old machine. Cell 107, 563–565 (2001).
Meneghini, M.D., Wu, M. & Madhani, H.D. Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell 112, 725–736 (2003).
van Leeuwen, F. & Gottschling, D. E. The histone minority report: the variant shall not be silenced. Cell 112, 591–593 (2003).
Acknowledgements
We thank David Jung and Katrin Chua for manuscript discussions. F.W.A is an Investigator and C.H.B. an Associate of the Howard Hughes Medical Institute. R.M. is supported by a Human Frontier Science Program fellowship. Work in the lab is also supported by the National Institutes of Health and the National Cancer Institute.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Mostoslavsky, R., Alt, F. & Bassing, C. Chromatin dynamics and locus accessibility in the immune system. Nat Immunol 4, 603–606 (2003). https://doi.org/10.1038/ni0703-603
Issue Date:
DOI: https://doi.org/10.1038/ni0703-603
This article is cited by
-
Epigenetic reprogramming of T cells: unlocking new avenues for cancer immunotherapy
Cancer and Metastasis Reviews (2024)
-
Epigenetic signatures of stem-cell identity
Nature Reviews Genetics (2007)
-
Thinking About Evolution in Terms of Cellular Computing
Natural Computing (2005)
-
Targeted inhibition of V(D)J recombination by a histone methyltransferase
Nature Immunology (2004)