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Acknowledgements
Supported by the German Federal Ministry of Education and Research (BMBF; T-Sys, TIL-REP and SB-Epo) and by the Collaborative Research Centers SFB TR36 (TP-B10/13) and SFB 1054 (TP-B09).
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M.F. and J.R. performed mathematical analysis; V.R.B. and D.H.B. provided and analyzed experimental data on single cell–based fate mapping; T.H. supervised the mathematical analyses; all authors discussed the results and wrote the paper.
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Integrated supplementary information
Supplementary Figure 1 A bifurcating model with strictly asymmetric cell divisions of the naïve cells fails to account for the data.
(a) Model scheme of a bifurcating model that assumes strictly asymmetric cell divisions of the naïve cells into one pre-TM and one TSLE cell (dA), followed by proliferation of pre-TM and TSLE cells with subset-specific rates (λ1 and λ2, respectively). (b) Comparison of experimental data derived from single-cell fate mapping (white bars and open dots; same data as in Fig. 1d) with the best-fit of the model depicted in a (blue bars or curve).
Supplementary Figure 2 Model selection criteria favor the progressive over the bifurcating model of T cell subset diversification.
(a) In the bifurcating model (corresponding to Fig. 1a), naïve T cells can divide symmetrically into either two pre-TM cells (dS1) or two TSLE cells (dS2), or divide asymmetrically and give rise to one cell of each of the two phenotypes (dA). The model allows for subset-specific proliferation rates (denoted λ1 for pre-TM and λ2 for TSLE cells). Best-fit values for the five rates of the bifurcating model: λ1=1.18 d−1, λ2=1.38 d−1, dS1=0.74 d−1, dS2=0, dA=0.20 d−1. (b) The progressive model (corresponding to Fig. 1b) assumes a linear diversification pathway with naïve T cells differentiating into pre-TM cells (d0) which in turn give rise to TSLE cells (d1). The nomenclature for the proliferation rates is as in a. Best-fit values for the four rates of the progressive model: λ1=1.35 d−1, λ2=1.53 d−1, d1=0.44 d−1, d2=0.035 d−1. (c) χ2 min over degrees of freedom (defined as the difference between the number of data points and number of estimated parameters) for both models as well as the difference in the (finite sample size corrected) Akaike information criterion between the models.
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Flossdorf, M., Rössler, J., Buchholz, V. et al. CD8+ T cell diversification by asymmetric cell division. Nat Immunol 16, 891–893 (2015). https://doi.org/10.1038/ni.3235
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DOI: https://doi.org/10.1038/ni.3235
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