Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Homozygosity mapping of the gene for alkaptonuria to chromosome 3q2

Abstract

Alkaptonuria, the first human disorder recognized by Garrod as an inborn error of metabolism, is a rare recessive condition that darkens urine and causes a debilitating arthritis termed ochronosis. We have studied two families with consanguineous parents and four affected children in order to map the gene responsible for alkaptonuria. Coinheritance of either neonatal severe hyperparathyroidism or sucrase–isomaltase deficiency and alkaptonuria provided a candidate location for the mutated genes on chromosome 3. Homozygosity mapping with polymorphic loci identified a 16 centiMorgan region on chromosome 3q2 that contains the alkaptonuria gene. Analysis of two additional nonconsanguineous families supports linkage of alkaptonuria to this single locus (combined lod score = 4.3, θ = 0).

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. La Du, B.N. in The Metabolic Basis of Inherited Disease (eds Stanbury J.B. et al.) 775–790 (McGraw-Hill, New York, 1986).

    Google Scholar 

  2. O'Brien, W.M., La Du, B.N. & Bunim, J.J. Biochemical, pathologic and clinical aspects of alcaptonuria, ochronosis and ochronotic arthropathy. Review of world literature (1584–1962). Am. J. Med. 34, 813–838 (1963).

    Article  Google Scholar 

  3. Garrod, A.E. The Croonian lectures on inborn errors of metabolism. Lecture II Alkaptonuria. Lancet 2, 73–79 (1908).

    CAS  Google Scholar 

  4. Bateson, W. Mendel's principles of heredity (Cambridge University Press, Cambridge, 1902).

    Google Scholar 

  5. Smith, C. The detection of linkage in human genetics. J. Royal Stat. Soc. B. 15, 153–184 (1953).

    Google Scholar 

  6. Lander, E.S. & Botstein, D. Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children. Science 236, 1567–1570 (1987).

    Article  CAS  Google Scholar 

  7. Steinmann, B., Gnehm, H.E., Rao, V.H., Kind, H.P. & Prader, A. Neonatal severe primary hyperparathyroidism and alkaptonuria in a boy born to related parents with familial hypocalciuric hypercalcemia. Helv. Paediat. Acta. 39, 171–186 (1984).

    CAS  PubMed  Google Scholar 

  8. Marx, S.J. et al. An association between neonatal severe primary hyperparathyroidism and familial hypocalciuric hypercalcemia in three kindreds. New Engl. J. Med. 306, 257–264 (1982).

    Article  CAS  Google Scholar 

  9. Chou, Y.-H.W. et al. The gene responsible for familial hypocalciuric hypercalcemia maps to chromosome 3q in four unrelated families. Nature Genet. 1, 295–9 (1992).

    Article  CAS  Google Scholar 

  10. Garnica, A.D., Cerda, J.J., Maenard, D., Preiser, H. & Crane, K. Alcaptonuria and sucrase-isomaltase deficiency in three offspring of a consanguineous marriage. Acta Vitaminol. Enzymol. 3, 157–169 (1981).

    CAS  PubMed  Google Scholar 

  11. West, L.F., Davis, M.B., Green, F.R., Lindenbaum, R.H. & Swallow, D.M. Regional assignment of the gene coding for sucrase-isomaltase (SI) to chromosome 3q25–26. Ann. hum. Genet. 52, 57–61 (1988).

    Article  CAS  Google Scholar 

  12. Swallow, D.M. et al. Analyses of linkage between SI (sucrase-isomaltase) and markers on chromosome 3. Cytogenet. Cell Genet. 58, 1881 (1991).

    Google Scholar 

  13. NIH/CEPH Collaborative Mapping Group.A comprehensive genetic linkage map of the human genome. Science 258, 67–86 (1992).

  14. Weissenbach, J. et al. A second-generation linkage map of the human genome. Nature 359, 794–801 (1992).

    Article  CAS  Google Scholar 

  15. Chantret, I. et al. Sequence of the complete cDNA and the 5′ structure of the human sucrase-isomaltase gene. Biochem. J. 285, 915–923 (1992).

    Article  CAS  Google Scholar 

  16. Stenn, F.F., Milgram, J.W., Lee, S.L., Weigand, R.J. & Veis, A. Biochemical identification of homogentisic acid pigment in an ochronotic Egyptian mummy. Science 197, 466 (1977).

    Article  Google Scholar 

  17. Alper, D.H. & Isselbacher, K.J. Disaccharidase deficiency. Advances in Metabolic Disorders. (eds Levine, R & Luft, R.) 73–122 (New York, Academic Press, 1970).

    Google Scholar 

  18. Naim, H.Y. et al. Sucrase-isomaltase deficiency in humans. Different mutations disrupt intracellular transport, processing, and function of an intestinal brush border enzyme. J. clin. Invest. 82, 667–679 (1988).

    Article  CAS  Google Scholar 

  19. Anderson, M.A. & Gusella, J.F. Use of cyclosporin A in establishing Epstein-Barr Virus transformed human lymphoblastic cell lines. In vitro 20, 856–8 (1984).

    Article  CAS  Google Scholar 

  20. Richards, E.J. Preparation and analysis of DNA. Current Protocols in Molecular Biology. (eds Ausubel F.M. et al.) (Greene Publishing, New York, 1992).

    Google Scholar 

  21. Ott, J. Analysis of human genetic linkage (Johns Hopkins University Press, Baltimore, 1983).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Pollak, M., Wu Chou, YH., Cerda, J. et al. Homozygosity mapping of the gene for alkaptonuria to chromosome 3q2. Nat Genet 5, 201–204 (1993). https://doi.org/10.1038/ng1093-201

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/ng1093-201

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing