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Aberrant methylation of donor genome in cloned bovine embryos

Abstract

Despite recent successes in cloning various animal species, the use of somatic cells as the source of donor nuclei has raised many practically relevant questions such as increased abortion rates, high birth weight and perinatal death1,2,3. These anomalies may be caused by incomplete epigenetic reprogramming of donor DNA. Genome-wide demethylation occurs during early development, 'erasing' gamete-specific methylation patterns inherited from the parents4,5,6,7,8. This process may be a prerequisite for the formation of pluripotent stem cells that are important for the later development9. Here, we provide evidence that cloned bovine embryos may have impaired epigenetic reprogramming capabilities. We found highly aberrant methylation patterns in various genomic regions of cloned embryos. Cloned blastocysts closely resembled donor cells in their overall genomic methylation status, which was very different from that of normal blastocysts produced in vitro or in vivo. We found demethylation of the Bov-B long interspersed nuclear element sequence in normal embryos, but not in cloned embryos, in which the donor-type methylation was simply maintained during preimplantation development. There were also significant variations in the degree of methylation among individual cloned blastocysts. Our findings indicate that the developmental anomalies of cloned embryos could be due to incomplete epigenetic reprogramming of donor genomic DNA.

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Figure 1: Methylation status of the satellite I sequences of fetal bovine fibroblasts in growing and starved conditions.
Figure 2: Methylation status of the satellite sequences of IVF or NT bovine embryos at various developmental stages.
Figure 3: Methylation status of individual blastocysts in the satellite I region.
Figure 4: Methylation of various genomic sequences in donor cells and IVF- or NT-derived blastocysts.
Figure 5: Changes in DNA methylation of the Bov-B long interspersed nuclear element repeats in embryos derived from IVF (a) or NT (b).

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References

  1. Wilmut, I., Schnieke, A.E., McWhir, J., Kind, A.J. & Campbell, K.H. Viable offspring derived from fetal and adult mammalian cells. Nature 385, 810–813 (1997).

    Article  CAS  PubMed  Google Scholar 

  2. Schnieke, A.E. et al. Human factor IX transgenic sheep produced by transfer of nuclei from transfected fetal fibroblasts. Science 278, 2130–2133 (1997).

    Article  CAS  PubMed  Google Scholar 

  3. Campbell, K.H., McWhir, J., Ritchie, W.A. & Wilmut, I. Sheep cloned by nuclear transfer from a cultured cell line. Nature 380, 64–66 (1996).

    Article  CAS  PubMed  Google Scholar 

  4. Howlett, S.K. & Reik, W. Methylation levels of maternal and paternal genomes during preimplantation development. Development 113, 119–127 (1991).

    CAS  PubMed  Google Scholar 

  5. Sanford, J., Forrester, L., Chapman, V., Chandley, A. & Hastie, N. Methylation patterns of repetitive DNA sequences in germ cells of Mus musculus. Nucleic Acids Res. 12, 2823–2836 (1984).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Monk, M., Boubelik, M. & Lehnert, S. Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development. Development 99, 371–382 (1987).

    CAS  PubMed  Google Scholar 

  7. Oswald, J. et al. Active demethylation of the paternal genome in the mouse zygote. Curr. Biol. 10, 475–478 (2000).

    Article  CAS  PubMed  Google Scholar 

  8. Mayer, W., Niveleau, A., Walter, J., Fundele, R. & Haaf, T. Demethylation of the zygotic paternal genome. Nature 403, 501–502 (2000).

    Article  CAS  PubMed  Google Scholar 

  9. Reik, W. & Surani, A. Genomic imprinting, (IRL Press at Oxford University Press, Oxford; 1997).

    Google Scholar 

  10. Gonzalgo, M.L. et al. Identification and characterization of differentially methylated regions of genomic DNA by methylation-sensitive arbitrarily primed PCR. Cancer Res. 57, 594–599 (1997).

    CAS  PubMed  Google Scholar 

  11. Cardoso, M.C. & Leonhardt, H. DNA methyltransferase is actively retained in the cytoplasm during early development. J. Cell Biol. 147, 25–32 (1999).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Carlson, L.L., Page, A.W. & Bestor, T.H. Properties and localization of DNA methyltransferase in preimplantation mouse embryos: implications for genomic imprinting. Genes Dev. 6, 2536–2541 (1992).

    Article  CAS  PubMed  Google Scholar 

  13. Mertineit, C. et al. Sex-specific exons control DNA methyltransferase in mammalian germ cells. Development 125, 889–897 (1998).

    CAS  PubMed  Google Scholar 

  14. Leonhardt, H., Page, A.W., Weier, H.U. & Bestor, T.H. A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei. Cell 71, 865–873 (1992).

    Article  CAS  PubMed  Google Scholar 

  15. Cibelli, J.B. et al. Cloned transgenic calves produced from nonquiescent fetal fibroblasts. Science 280, 1256–1258 (1998).

    Article  CAS  PubMed  Google Scholar 

  16. Tsunoda, Y., Yasui, T., Nakamura, K., Uchida, T. & Sugie, T. Effect of cutting the zona pellucida on the pronuclear transplantation in the mouse. J. Exp. Zool. 240, 119–125 (1986).

    Article  CAS  PubMed  Google Scholar 

  17. Rosenkrans, C.F., Jr., Zeng, G.Q., GT, M.C., Schoff, P.K. & First, N.L. Development of bovine embryos in vitro as affected by energy substrates. Biol. Reprod. 49, 459–462 (1993).

    Article  CAS  PubMed  Google Scholar 

  18. Warnecke, P.M., Mann, J.R., Frommer, M. & Clark, S.J. Bisulfite sequencing in preimplantation embryos: DNA methylation profile of the upstream region of the mouse imprinted H19 gene. Genomics 51, 182–190 (1998).

    Article  CAS  PubMed  Google Scholar 

  19. Wells, D.N., Misica, P.M. & Tervit, H.R. Production of cloned calves following nuclear transfer with cultured adult mural granulosa cells. Biol. Reprod. 60, 996–1005 (1999).

    Article  CAS  PubMed  Google Scholar 

  20. Thompson, J.G. et al. Effect of delayed supplementation of fetal calf serum to culture medium on bovine embryo development in vitro and following transfer. Theriogenology 49, 1239–1249 (1998).

    Article  CAS  PubMed  Google Scholar 

  21. Kubota, C. et al. Six cloned calves produced from adult fibroblast cells after long-term culture. Proc. Natl. Acad. Sci. USA 97, 990–995 (2000).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Zakhartchenko, V. et al. Effects of serum starvation and re-cloning on the efficiency of nuclear transfer using bovine fetal fibroblasts. J. Reprod. Fertil. 115, 325–331 (1999).

    Article  CAS  PubMed  Google Scholar 

  23. Zakhartchenko, V. et al. Adult cloning in cattle: potential of nuclei from a permanent cell line and from primary cultures. Mol. Reprod. Dev. 54, 264–272 (1999).

    Article  CAS  PubMed  Google Scholar 

  24. Shiga, K., Fujita, T., Hirose, K., Sasae, Y. & Nagai, T. Production of calves by transfer of nuclei from cultured somatic cells obtained from Japanese black bulls. Theriogenology 52, 527–535 (1999).

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

We thank Y.I. Yeom for help, discussions and comments on the manuscript. We also thank H. Leonhardt and H.J. Hong for peer review and comments on the manuscript. This work is supported by grants (HS2705 and HS2550) of the Ministry of Science and Technology (MOST), Korea.

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Correspondence to Yong-Mahn Han.

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Kang, YK., Koo, DB., Park, JS. et al. Aberrant methylation of donor genome in cloned bovine embryos. Nat Genet 28, 173–177 (2001). https://doi.org/10.1038/88903

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