Table 2: Associations between comb and fecundity phenotypes in the wild × domestic intercross of genes in feralisation sweeps in Kauai.

From: Feralisation targets different genomic loci to domestication in the chicken

TraitGenesP valuechrPositionProbe
BroodinessSEMA3A0.003218,522,175NM_204977_SEMA3A
Comb massARHGAP250.004013 NM_001030883_ARHGAP25
Comb massDPYSL30.01011317,454,812NM_204493_DPYSL3*
Comb massSTK32A0.00161317,432,186ENSGALT00000012246_STK32A
Egg number (brooding trial)EFR3A0.00182140,874,788ENSGALT00000026233_ENSGALG00000016270
Egg number (brooding trial)LOC4196770.0033235,463,429ENSGALT00000006094_ENSGALG00000003838
Egg number (brooding trial)NSL10.0008321,140,905NM_001044646_NSL1
Egg number (brooding trial)PPIE0.0041235,415,385ENSGALT00000021831_ENSGALG00000013383
Egg number (brooding trial)SEMA3A0.001718,522,175NM_204977_SEMA3A
Egg number (brooding trial)STX20.0038152,912,110ENSGALT00000034743_ENSGALG00000002536
Mean egg weight (fecundity trial)NT5C1A0.0030235,450,092ENSGALT00000006051_ENSGALG00000003816
Mean egg weight (fecundity trial)PABPC40.0003235,420,069ENSGALT00000006028_ENSGALG00000003800
Total egg production (brooding trial)EFR3A0.00412140,874,788ENSGALT00000026233_ENSGALG00000016270
Total egg production (brooding trial)BMP8A0.0019235,408,458ENSGALT00000040607_ENSGALG00000024064
Total egg production (brooding trial)LOC4196770.0038235,463,429ENSGALT00000006094_ENSGALG00000003838
Total egg production (brooding trial)MOCS30.00332013,729,490ENSGALT00000012964_ENSGALG00000007986
Total egg production (brooding trial)NSL10.0019321,140,905NM_001044646_NSL1
Total egg production (brooding trial)PABPC40.0037235,420,069ENSGALT00000006028_ENSGALG00000003800
Total egg production (brooding trial)PPIE0.0026235,415,385ENSGALT00000021831_ENSGALG00000013383
Total egg production (brooding trial)SEMA3A0.003918,522,175NM_204977_SEMA3A