Figure 5: An example of information provided for each data set with RUST Software.

From: Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

Figure 5: An example of information provided for each data set with RUST Software.
Figure 5

RUST metafootprint analysis for codons is shown at the top. Blue indicates Kullback–Leibler (K–L) divergence for individual codons and green for two adjacent codons. Zero coordinate corresponds to the inferred position of the A-site. Middle left plot shows RUST ratios (y axis) for individual codons ordered by encoding amino acids at the axis x, the size of the disc indicates the codon usage. Middle right plot illustrates the ability of RUST parameters to reconstruct experimental densities (green—based on identity of the A-site codons and violet is based on all codons within footprints). Bottom left plot shows locations of observed synergistic effects between amino acids that affect decoding rates, the bottom middle plot shows their strength and the bottom right plot illustrates the triplet periodicity signal for footprints of different lengths. This information is available for each data set used in this study at http://lapti.ucc.ie/rust/.