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Light-controlled gene silencing in zebrafish embryos

Abstract

Functional genomic studies in zebrafish frequently use synthetic oligonucleotides called morpholinos that block RNA splicing or translation. However, the constitutive activity of these reagents limits their experimental utility. We report here the synthesis of a photoactivatable morpholino targeting the no tail (ntl) gene. This caged reagent permits spatiotemporal gene regulation in vivo and the photochemical generation of functionally mosaic organisms.

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Figure 1: A caged morpholino targeting the ntl gene.
Figure 2: Spatiotemporal regulation of ntl expression.

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References

  1. Nasevicius, A. & Ekker, S.C. Nat. Genet. 26, 216–220 (2000).

    Article  CAS  Google Scholar 

  2. Ordoukhanian, P. & Taylor, J.S. J. Am. Chem. Soc. 117, 9570–9571 (1995).

    Article  CAS  Google Scholar 

  3. Tang, X. & Dmochowski, I.J. Angew. Chem. Int. Edn Engl. 45, 3523–3526 (2006).

    Article  CAS  Google Scholar 

  4. Halpern, M.E., Ho, R.K., Walker, C. & Kimmel, C.B. Cell 75, 99–111 (1993).

    Article  CAS  Google Scholar 

  5. Schulte-Merker, S., Ho, R.K., Herrmann, B.G. & Nusslein-Volhard, C. Development 116, 1021–1032 (1992).

    CAS  PubMed  Google Scholar 

  6. Rostovtsev, V.V., Green, L.G., Fokin, V.V. & Sharpless, K.B. Angew. Chem. Int. Edn Engl. 41, 2596–2599 (2002).

    Article  CAS  Google Scholar 

  7. Melby, A.E., Warga, R.M. & Kimmel, C.B. Development 122, 2225–2237 (1996).

    CAS  PubMed  Google Scholar 

  8. Halpern, M.E. et al. Dev. Biol. 187, 154–170 (1997).

    Article  CAS  Google Scholar 

  9. Amacher, S.L., Draper, B.W., Summers, B.R. & Kimmel, C.B. Development 129, 3311–3323 (2002).

    CAS  PubMed  Google Scholar 

  10. Stemple, D.L. Development 132, 2503–2512 (2005).

    Article  CAS  Google Scholar 

  11. Ando, R., Hama, H., Yamamoto-Hino, M., Mizuno, H. & Miyawaki, A. Proc. Natl. Acad. Sci. USA 99, 12651–12656 (2002).

    Article  CAS  Google Scholar 

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Acknowledgements

We thank B. Sharpless (Scripps Research Institute) for tris(benzyltriazolylmethyl)-amine ligand; M. Halpern (Carnegie Institution of Washington) for a standard ntl morpholino; S. Schulte-Merker (Netherlands Institute for Developmental Biology) and J. Smith (Wellcome Trust/Cancer Research UK Gurdon Institute) for anti-Ntl antibody; and A. Miyawaki (RIKEN Brain Science Institute) for Kaede complementary DNA. We also thank M. Halpern for comments on the manuscript. This work was supported by the US National Institute of General Medical Sciences (R01 GM072600) and a Basil O'Connor Research Starter Award from the March of Dimes Foundation.

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Correspondence to James K Chen.

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Supplementary Figures 1–4 and Supplementary Methods (PDF 7604 kb)

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Shestopalov, I., Sinha, S. & Chen, J. Light-controlled gene silencing in zebrafish embryos. Nat Chem Biol 3, 650–651 (2007). https://doi.org/10.1038/nchembio.2007.30

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