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Allosteric Wip1 phosphatase inhibition through flap-subdomain interaction

Abstract

Although therapeutic interventions of signal-transduction cascades with targeted kinase inhibitors are a well-established strategy, drug-discovery efforts to identify targeted phosphatase inhibitors have proven challenging. Herein we report a series of allosteric, small-molecule inhibitors of wild-type p53-induced phosphatase (Wip1), an oncogenic phosphatase common to multiple cancers. Compound binding to Wip1 is dependent on a 'flap' subdomain located near the Wip1 catalytic site that renders Wip1 structurally divergent from other members of the protein phosphatase 2C (PP2C) family and that thereby confers selectivity for Wip1 over other phosphatases. Treatment of tumor cells with the inhibitor GSK2830371 increases phosphorylation of Wip1 substrates and causes growth inhibition in both hematopoietic tumor cell lines and Wip1-amplified breast tumor cells harboring wild-type TP53. Oral administration of Wip1 inhibitors in mice results in expected pharmacodynamic effects and causes inhibition of lymphoma xenograft growth. To our knowledge, GSK2830371 is the first orally active, allosteric inhibitor of Wip1 phosphatase.

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Figure 1: Identification of Wip1 phosphatase inhibitor chemical series.
Figure 2: Binding site of capped amino acid on Wip1.
Figure 3: Compound binding to flap region confers selectivity for Wip1 vs.
Figure 4: Cellular activity of Wip1 inhibitor 8.
Figure 5: Selectivity of capped amino acids binding to Wip1 in cells.
Figure 6: Pharmacodynamic and antitumor activity of 8.

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Acknowledgements

We thank M. Sarpong, C. Donatelli, J. Deng, T. Graybill, K.O. Johanson, T. Rust, T. Jurewicz and T. Tomaszek for their contributions in the identification and characterization of this compound series.

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A.G.G., M.R., A.G., S.-Y.Z., E.M. and R.K. conducted cellular and in vivo studies; T.H.F., M.A.S., M.G.D., X.P. and D.A.H. conducted medicinal chemistry; K.F., J.Y., B.P., E.D., A.J. and M.B. conducted enzymatic assays and analysis; J.-P.J., M.S. and S.M. conducted the HTS and thermal shift assays; D.E.M. conducted proteomic analysis; R.H.S., H.Z., R.B.K. and B.S. conducted gene expression and protein purification; and N.N. and G.C. conducted computational analysis and protein construct design. A.G.G., M.R., T.H.F., D.A.H. and R.K. wrote the manuscript, which was reviewed by all authors.

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Correspondence to Dirk A Heerding or Rakesh Kumar.

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All authors are employees of GlaxoSmithKline and several have stock ownership of GlaxoSmithKline.

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Supplementary Results, Supplementary Figures 1-22, Supplementary Tables 1-4 and Supplementary Note. (PDF 5930 kb)

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Gilmartin, A., Faitg, T., Richter, M. et al. Allosteric Wip1 phosphatase inhibition through flap-subdomain interaction. Nat Chem Biol 10, 181–187 (2014). https://doi.org/10.1038/nchembio.1427

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