Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Directed differentiation of cholangiocytes from human pluripotent stem cells

Abstract

Although bile duct disorders are well-recognized causes of liver disease, the molecular and cellular events leading to biliary dysfunction are poorly understood. To enable modeling and drug discovery for biliary disease, we describe a protocol that achieves efficient differentiation of biliary epithelial cells (cholangiocytes) from human pluripotent stem cells (hPSCs) through delivery of developmentally relevant cues, including NOTCH signaling. Using three-dimensional culture, the protocol yields cystic and/or ductal structures that express mature biliary markers, including apical sodium-dependent bile acid transporter, secretin receptor, cilia and cystic fibrosis transmembrane conductance regulator (CFTR). We demonstrate that hPSC-derived cholangiocytes possess epithelial functions, including rhodamine efflux and CFTR-mediated fluid secretion. Furthermore, we show that functionally impaired hPSC-derived cholangiocytes from cystic fibrosis patients are rescued by CFTR correctors. These findings demonstrate that mature cholangiocytes can be differentiated from hPSCs and used for studies of biliary development and disease.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Characterization of the hepatoblast stage of development in hPSC differentiation cultures.
Figure 2: NOTCH signaling promotes cholangiocyte differentiation from hPSC-derived hepatoblasts.
Figure 3: 3D culture promotes cholangiocyte maturation.
Figure 4: Gene expression profile of hPSCs-derived cholangiocytes compared to sorted cholangiocytes.
Figure 5: Function of hPSC-derived cholangiocytes in vitro.
Figure 6: Generation of cholangiocytes from CF patient iPSCs.
Figure 7: Functional analysis of cholangiocytes from CF patient iPSCs.

Similar content being viewed by others

References

  1. O'Hara, S.P., Tabibian, J.H., Splinter, P.L. & LaRusso, N.F. The dynamic biliary epithelia: molecules, pathways, and disease. J. Hepatol. 58, 575–582 (2013).

    Article  PubMed  Google Scholar 

  2. Kamath, B.M. et al. Outcomes of liver transplantation for patients with Alagille syndrome: the studies of pediatric liver transplantation experience. Liver Transpl. 18, 940–948 (2012).

    Article  PubMed  Google Scholar 

  3. Si-Tayeb, K. et al. Highly efficient generation of human hepatocyte-like cells from induced pluripotent stem cells. Hepatology 51, 297–305 (2010).

    Article  CAS  PubMed  Google Scholar 

  4. Touboul, T. et al. Generation of functional hepatocytes from human embryonic stem cells under chemically defined conditions that recapitulate liver development. Hepatology 51, 1754–1765 (2010).

    Article  CAS  PubMed  Google Scholar 

  5. Takayama, K. et al. Generation of metabolically functioning hepatocytes from human pluripotent stem cells by FOXA2 and HNF1alpha transduction. J. Hepatol. 57, 628–636 (2012).

    Article  CAS  PubMed  Google Scholar 

  6. Ogawa, S. et al. Three-dimensional culture and cAMP signaling promote the maturation of human pluripotent stem cell-derived hepatocytes. Development 140, 3285–3296 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Dianat, N. et al. Generation of functional cholangiocyte-like cells from human pluripotent stem cells and HepaRG cells. Hepatology 60, 700–714 (2014).

    Article  CAS  PubMed  Google Scholar 

  8. Si-Tayeb, K., Lemaigre, F.P. & Duncan, S.A. Organogenesis and development of the liver. Dev. Cell 18, 175–189 (2010).

    Article  CAS  PubMed  Google Scholar 

  9. Zong, Y. et al. Notch signaling controls liver development by regulating biliary differentiation. Development 136, 1727–1739 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Hofmann, J.J. et al. Jagged1 in the portal vein mesenchyme regulates intrahepatic bile duct development: insights into Alagille syndrome. Development 137, 4061–4072 (2010).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Kodama, Y., Hijikata, M., Kageyama, R., Shimotohno, K. & Chiba, T. The role of notch signaling in the development of intrahepatic bile ducts. Gastroenterology 127, 1775–1786 (2004).

    Article  CAS  PubMed  Google Scholar 

  12. Geisler, F. et al. Liver-specific inactivation of Notch2, but not Notch1, compromises intrahepatic bile duct development in mice. Hepatology 48, 607–616 (2008).

    Article  CAS  PubMed  Google Scholar 

  13. Li, L. et al. Alagille syndrome is caused by mutations in human Jagged1, which encodes a ligand for Notch1. Nat. Genet. 16, 243–251 (1997).

    Article  CAS  PubMed  Google Scholar 

  14. McDaniell, R. et al. NOTCH2 mutations cause Alagille syndrome, a heterogeneous disorder of the notch signaling pathway. Am. J. Hum. Genet. 79, 169–173 (2006).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Kamath, B.M. et al. NOTCH2 mutations in Alagille syndrome. J. Med. Genet. 49, 138–144 (2012).

    Article  CAS  PubMed  Google Scholar 

  16. Gouon-Evans, V. et al. BMP-4 is required for hepatic specification of mouse embryonic stem cell-derived definitive endoderm. Nat. Biotechnol. 24, 1402–1411 (2006).

    Article  CAS  PubMed  Google Scholar 

  17. Zaret, K.S. & Grompe, M. Generation and regeneration of cells of the liver and pancreas. Science 322, 1490–1494 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Suzuki, A., Sekiya, S., Buscher, D., Izpisua Belmonte, J.C. & Taniguchi, H. Tbx3 controls the fate of hepatic progenitor cells in liver development by suppressing p19ARF expression. Development 135, 1589–1595 (2008).

    Article  CAS  PubMed  Google Scholar 

  19. Lüdtke, T.H., Christoffels, V.M., Petry, M. & Kispert, A. Tbx3 promotes liver bud expansion during mouse development by suppression of cholangiocyte differentiation. Hepatology 49, 969–978 (2009).

    Article  PubMed  Google Scholar 

  20. Raynaud, P., Carpentier, R., Antoniou, A. & Lemaigre, F.P. Biliary differentiation and bile duct morphogenesis in development and disease. Int. J. Biochem. Cell Biol. 43, 245–256 (2011).

    Article  CAS  PubMed  Google Scholar 

  21. Schmitt, T.M. & Zuniga-Pflucker, J.C. Induction of T cell development from hematopoietic progenitor cells by delta-like-1 in vitro. Immunity 17, 749–756 (2002).

    Article  CAS  PubMed  Google Scholar 

  22. Lehar, S.M., Dooley, J., Farr, A.G. & Bevan, M.J. Notch ligands Delta 1 and Jagged1 transmit distinct signals to T-cell precursors. Blood 105, 1440–1447 (2005).

    Article  CAS  PubMed  Google Scholar 

  23. Fernández-Sánchez, V. et al. In vitro effects of stromal cells expressing different levels of Jagged-1 and Delta-1 on the growth of primitive and intermediate CD34(+) cell subsets from human cord blood. Blood Cells Mol. Dis. 47, 205–213 (2011).

    Article  PubMed  Google Scholar 

  24. Takayama, K. et al. CCAAT/enhancer binding protein-mediated regulation of TGFbeta receptor 2 expression determines the hepatoblast fate decision. Development 141, 91–100 (2014).

    Article  CAS  PubMed  Google Scholar 

  25. Dorrell, C. et al. Transcriptomes of the major human pancreatic cell types. Diabetologia 54, 2832–2844 (2011).

    Article  CAS  PubMed  Google Scholar 

  26. Irion, S. et al. Identification and targeting of the ROSA26 locus in human embryonic stem cells. Nat. Biotechnol. 25, 1477–1482 (2007).

    Article  CAS  PubMed  Google Scholar 

  27. Dekkers, J.F. et al. A functional CFTR assay using primary cystic fibrosis intestinal organoids. Nat. Med. 19, 939–945 (2013).

    Article  CAS  PubMed  Google Scholar 

  28. Molinski, S. et al. Functional rescue of F508del-CFTR using small molecule correctors. Front. Pharmacol. 3, 160 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Eckford, P.D., Li, C., Ramjeesingh, M. & Bear, C.E. Cystic fibrosis transmembrane conductance regulator (CFTR) potentiator VX-770 (ivacaftor) opens the defective channel gate of mutant CFTR in a phosphorylation-dependent but ATP-independent manner. J. Biol. Chem. 287, 36639–36649 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Okiyoneda, T. et al. Mechanism-based corrector combination restores DeltaF508-CFTR folding and function. Nat. Chem. Biol. 9, 444–454 (2013).

    Article  CAS  PubMed  Google Scholar 

  31. Tanimizu, N. & Miyajima, A. Notch signaling controls hepatoblast differentiation by altering the expression of liver-enriched transcription factors. J. Cell Sci. 117, 3165–3174 (2004).

    Article  CAS  PubMed  Google Scholar 

  32. Tanimizu, N., Saito, H., Mostov, K. & Miyajima, A. Long-term culture of hepatic progenitors derived from mouse Dlk+ hepatoblasts. J. Cell Sci. 117, 6425–6434 (2004).

    Article  CAS  PubMed  Google Scholar 

  33. Clotman, F. et al. Control of liver cell fate decision by a gradient of TGF beta signaling modulated by Onecut transcription factors. Genes Dev. 19, 1849–1854 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Turner, R. et al. Human hepatic stem cell and maturational liver lineage biology. Hepatology 53, 1035–1045 (2011).

    Article  CAS  PubMed  Google Scholar 

  35. Cardinale, V. et al. Multipotent stem/progenitor cells in human biliary tree give rise to hepatocytes, cholangiocytes, and pancreatic islets. Hepatology 54, 2159–2172 (2011).

    Article  CAS  PubMed  Google Scholar 

  36. Leeuwen, L., Fitzgerald, D.A. & Gaskin, K.J. Liver disease in cystic fibrosis. Paediatr. Respir. Rev. 15, 69–74 (2014).

    PubMed  Google Scholar 

  37. Van Goor, F. et al. Correction of the F508del-CFTR protein processing defect in vitro by the investigational drug VX-809. Proc. Natl. Acad. Sci. USA 108, 18843–18848 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Zhao, D. et al. Derivation and characterization of hepatic progenitor cells from human embryonic stem cells. PLoS ONE 4, e6468 (2009).

    Article  PubMed  PubMed Central  Google Scholar 

  39. Yanagida, A., Ito, K., Chikada, H., Nakauchi, H. & Kamiya, A. An in vitro expansion system for generation of human iPS cell-derived hepatic progenitor-like cells exhibiting a bipotent differentiation potential. PLoS ONE 8, e67541 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Kennedy, M., D'Souza, S.L., Lynch-Kattman, M., Schwantz, S. & Keller, G. Development of the hemangioblast defines the onset of hematopoiesis in human ES cell differentiation cultures. Blood 109, 2679–2687 (2007).

    CAS  PubMed  PubMed Central  Google Scholar 

  41. Nostro, M.C., Cheng, X., Keller, G.M. & Gadue, P. Wnt, activin, and BMP signaling regulate distinct stages in the developmental pathway from embryonic stem cells to blood. Cell Stem Cell 2, 60–71 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Nostro, M.C. et al. Stage-specific signaling through TGFbeta family members and WNT regulates patterning and pancreatic specification of human pluripotent stem cells. Development 138, 861–871 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Wong, A.P. et al. Directed differentiation of human pluripotent stem cells into mature airway epithelia expressing functional CFTR protein. Nat. Biotechnol. 30, 876–882 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Hotta, A. et al. EOS lentiviral vector selection system for human induced pluripotent stem cells. Nat. Protoc. 4, 1828–1844 (2009).

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We would like to thank J. Rossant, J. Ellis and A.P. Wong (Hospital for Sick Children, Toronto, ON, Canada) for providing CF patient iPSCs (C1 and GM00997). We thank members of the G.K. and A.G. laboratories for discussion and feedback on the manuscript. We would like to thank F. Xu (Advanced Optical Microscopy Facility, University Health Network) for technical assistance with the time-lapse video. In addition, we would also like to thank O. Adeyi and the members of Department Pathology, University Health Network for technical assistance with immunohistochemistry. H9 hESC was obtained from The Wicell Research Institute (Madison, WI, USA), and MSC-iPSC1 cells were obtained from G.Q. Daley (Harvard Stem Cell Institute). This work was supported by funding from the McEwen Centre for Regenerative Medicine and the Canadian Institutes of Health Research MOP133620, (G.K.), the University Health Network Multi-Organ Transplant Program Academic Enrichment Fund (sponsored by Astellas Pharma Canada), Alagille Syndrome Alliance, SickKids Research Institute, Rare Disease Foundation and the Childhood Liver Disease Research and Education Network, U01 DK062453 (Sokol) from the National Institute of Diabetes, Digestive and Kidney Diseases (B.M.K. and A.G.) and the Canadian Institutes of Health Research (MOP:97954 and GPG:102171 to C.E.B.).

Author information

Authors and Affiliations

Authors

Contributions

S.O., M.O., G.K., B.M.K. and A.G. conceptualized the study. S.O. and M.O. led the experimental design and development of the differentiation protocol with input from all authors. S.O. and M.O. performed the hPSC differentiation and characterization of hPSC-derived cholangiocytes. M.O., C.E.B., S.A. and S.C. developed the cyst swelling assay for hPSC-derived cholangiocytes. B.L. and M.G. developed and used the ductal antibody for isolation of primary cholangiocytes from human liver. All authors analyzed and interpreted the data. M.O., S.O., G.K., B.M.K. and A.G. prepared the manuscript with contributions and critical revision from all authors.

Corresponding authors

Correspondence to Shinichiro Ogawa or Anand Ghanekar.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Supplementary information

Source data

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Ogawa, M., Ogawa, S., Bear, C. et al. Directed differentiation of cholangiocytes from human pluripotent stem cells. Nat Biotechnol 33, 853–861 (2015). https://doi.org/10.1038/nbt.3294

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nbt.3294

This article is cited by

Search

Quick links

Nature Briefing: Translational Research

Sign up for the Nature Briefing: Translational Research newsletter — top stories in biotechnology, drug discovery and pharma.

Get what matters in translational research, free to your inbox weekly. Sign up for Nature Briefing: Translational Research