Abstract
Creatinine measurements can be used to standardize urinary pesticide concentrations and to estimate “completeness” of urine collections. Published statistical models exist to predict 24-h creatinine, but many were developed assuming independence among observations. Using correlated repeated measurement data collected from an occupational cohort, the objectives were to create a predictive model for 24-h urinary creatinine and to compare the predictive capability of this model to earlier published models. Using a mixed-model methodology, the appropriate covariance structure was identified and utilized to model the measurements. A backwards elimination model building technique applied to the model building data set (110 adult male subjects and 457 creatinine values) yielded a final model that included variables for body mass index (BMI), height, diabetes, allergies, medical conditions that affect kidney function, use of creatine supplements, and anti-inflammatory medications. Using an external model validation data set (21 adult male subjects’ creatinine values, n=91 observations from a total of 275) the predictive performance of the model was evaluated using the mean square prediction error (MSPR) and the Pearson's correlation coefficient (r); its performance was better (MSPR=279184, r=0.43) than any of the earlier models investigated (MSPR: range 658860–393139; r, range 0.18–0.38). In conclusion, the use of a covariance structure that allowed repeated measurements for any one individual to be correlated, improved the predictive performance. For purposes of incomplete urine sample identification in observational studies, it is necessary to collect information in addition to age, gender, and BMI, which are typically used in these settings.
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Acknowledgements
This work was funded by a grant from CDC/NIOSH, PA-99-143, Occupational Safety and Health Research, R01 OH004084. We acknowledge the contribution of individuals involved in the project described, including: Kirk Hurto and Chris Forth (TruGreen Chemlawn); Kristen Wells, Ricky Ciner, Donna Huggins, Diane Bishop and Charlene Crawley (VCU); and, of course, the motivated and cooperative volunteers.
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Appendices
Appendix A
Details of the mixed model
The mixed model in matrix notation (Khattree and Naik, 1999) can be written as:
where: i=1, 2,…., n. n=number of subjects; pi=number of measurements made on the ith subject; q=number of fixed effects; r=number of random effects; yi=the pi × 1 vector of repeated measures on the ith subject; Xi=the known pi × q matrix of constants that describe the structure of the study with respect to fixed effects (including treatment design, regression explanatory or predictor variables) for the ith subject (Littell et al., 2006). β=the fixed q × 1 vector of unknown parameters; Zi=the known pi × r matrix of constants that describe the study's structure with regard to random effects (including blocking design and explanatory variables in random coefficient designs) for the ith subject (Littell et al., 2006). νi=the r × 1 vector of random effects for the ith subject; ɛi=the pi × 1 vector of random errors for the ith subject; with expected values, variances, and covariances given by (Khattree and Naik, 1999):
E( νi )=0; Var( νi )=σ2G1 (where G1 is the covariance matrix of the random effects)
E( ɛi )=0; Var( ɛi)=σ2Ri (where Ri is the covariance matrix of the repeated measures on subject i)
E(ν)=0; E( ɛ )=0;
For i≠j : Cov ( νi, νj )=0; Cov ( ɛi, ɛj )=0; Cov ( νi, ɛj )=0;
Cov ( νi, ɛi )=0; Cov (ν, ɛ)=0
Owing to the random vectors ν and ɛ in this mixed model, there are two possible distributions to consider — the conditional distribution of (y ∣ ν) and the marginal distribution of y as shown here (Littell et al., 2006):
By using the mixed model approach, it is possible to obtain insight into the within-subject variation, over time, for the total 24-h urinary creatinine level. The within-subject variation for subject i would be contained in the Ri covariance matrix referenced in the mixed model description shown above. The potential explanatory factors of age, height, weight, BMI, etc. are placed in the matrix of constants that describe the structure of the study with respect to fixed effects (i.e., the Xi matrix). No explanatory factors are placed in the model in the matrix of constants that describe the study's structure with regard to random effects (i.e., the matrix Zi =0). Hence, for this study's model, ν is a zero vector, G is a zero matrix, no random effects will be estimated, and the variation will be modeled through the R matrix.
Appendix B
Estimation of fixed and random effects in the mixed model when using REML
As noted earlier, for the mixed model, E(y)=X β and Var(y)=σ2[ZGZ′+R]. The Estimated Best Linear Unbiased Estimator (EBLUE) of the fixed effects ( ) and the Estimated Best Linear Unbiased Predictor (EBLUP) of the random effects () can be obtained by letting V=ZGZ′+R, “plugging in” the REML estimates of the G and R covariance matrices ( and respectively) into V to get , and then solving this system of mixed model equations (Henderson, 1984; Littell et al., 2006) shown here:
The solutions (Khattree and Naik, 1999) are:
Appendix C
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Kroos, D., Mays, J. & Harris, S. A model to predict 24-h urinary creatinine using repeated measurements in an occupational cohort study. J Expo Sci Environ Epidemiol 20, 516–525 (2010). https://doi.org/10.1038/jes.2009.40
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DOI: https://doi.org/10.1038/jes.2009.40
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