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The early onset of type 1 autoimmune hepatitis has a strong genetic influence: role of HLA and KIR genes

Abstract

We have previously reported a strong association between HLA-DRB1*1301 and type 1 pediatric autoimmune hepatitis (PAH) and between HLA-DR*0405 and adult autoimmune hepatitis (AAH). Because human killer cell immunoglobulin-like receptors are known to be associated with susceptibility to autoimmune diseases, we investigated the frequencies of HLA-A, B, C, DRB1 and KIR genes in 144 type 1 PAH and 86 AAH patients, which were compared with 273 healthy controls. We demonstrated in PAH the increased frequency of the functional form of KIR2DS4-Full Length (KIR2DS4-FL), which in combination with HLA-DRB1*1301 revealed a strong synergistic effect (odds ratio=36.5). PAH-KIR2DS4-FL+ subjects have shown an increased frequency of their putative HLA-C*02, 04 and 06 ligands. KIR analysis of PAH also revealed a decreased frequency of KIR2DL2 gene and its ligand. In contrast, AAH cases have shown a weaker increased frequency of KIR2DS4-FL, a lack of synergistic effect with HLA class II antigens and a moderate association with HLA-DRB1*0405. Of note, we demonstrated that liver T cells have a unique pattern of KIR expression. These results show a KIR gene involved in autoimmune hepatitis and suggest a stronger genetic influence for the early onset type I autoimmune hepatitis.

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References

  1. Mackay IR . Immunological aspects of chronic active hepatitis. Hepatology 1983; 3: 724–728.

    Article  CAS  Google Scholar 

  2. Czaja AJ . Natural history, clinical features, and treatment of autoimmune hepatitis. Semin Liver Dis 1984; 4: 1–12.

    Article  CAS  Google Scholar 

  3. Johnson PJ, McFarlane IG . Meeting report: International Autoimmune Hepatitis Group. Hepatology 1993; 18: 998–1005.

    Article  CAS  Google Scholar 

  4. Fainboim L, Marcos Y, Pando M, Capucchio M, Reyes GB, Galoppo C et al. Chronic active autoimmune hepatitis in children. Strong association with a particular HLA-DR6 (DRB1*1301) haplotype. Hum Immunol 1994; 41: 146–150.

    Article  CAS  Google Scholar 

  5. Pando M, Larriba J, Fernandez GC, Fainboim H, Ciocca M, Ramonet M et al. Pediatric and adult forms of type I autoimmune hepatitis in Argentina: evidence for differential genetic predisposition. Hepatology 1999; 30: 1374–1380.

    Article  CAS  Google Scholar 

  6. Bittencourt PL, Goldberg AC, Cancado EL, Porta G, Carrilho FJ, Farias AQ et al. Genetic heterogeneity in susceptibility to autoimmune hepatitis types 1 and 2. Am J Gastroenterol 1999; 94: 1906–1913.

    Article  CAS  Google Scholar 

  7. Fortes Mdel P, Machado IV, Gil G, Fernandez-Mestre M, Dagher L, Leon RV et al. Genetic contribution of major histocompatibility complex class II region to type 1 autoimmune hepatitis susceptibility in Venezuela. Liver Int 2007; 27: 1409–1416.

    Article  Google Scholar 

  8. Djilali-Saiah I, Renous R, Caillat-Zucman S, Debray D, Alvarez F . Linkage disequilibrium between HLA class II region and autoimmune hepatitis in pediatric patients. J Hepatol 2004; 40: 904–909.

    Article  CAS  Google Scholar 

  9. Donaldson PT, Doherty DG, Hayllar KM, McFarlane IG, Johnson PJ, Williams R . Susceptibility to autoimmune chronic active hepatitis: human leukocyte antigens DR4 and A1-B8-DR3 are independent risk factors. Hepatology 1991; 13: 701–706.

    Article  CAS  Google Scholar 

  10. Czaja AJ, Strettell MD, Thomson LJ, Santrach PJ, Moore SB, Donaldson PT et al. Associations between alleles of the major histocompatibility complex and type 1 autoimmune hepatitis. Hepatology 1997; 25: 317–323.

    Article  CAS  Google Scholar 

  11. Marcos Y, Fainboim HA, Capucchio M, Findor J, Daruich J, Reyes B et al. Two-locus involvement in the association of human leukocyte antigen with the extrahepatic manifestations of autoimmune chronic active hepatitis. Hepatology 1994; 19: 1371–1374.

    Article  CAS  Google Scholar 

  12. Seki T, Ota M, Furuta S, Fukushima H, Kondo T, Hino K et al. HLA class II molecules and autoimmune hepatitis susceptibility in Japanese patients. Gastroenterology 1992; 103: 1041–1047.

    Article  CAS  Google Scholar 

  13. Kulkarni S, Martin MP, Carrington M . The Yin and Yang of HLA and KIR in human disease. Semin Immunol 2008; 20: 343–352.

    Article  CAS  Google Scholar 

  14. Beziat V, Liu LL, Malmberg JA, Ivarsson MA, Sohlberg E, Bjorklund AT et al. NK cell responses to cytomegalovirus infection lead to stable imprints in the human KIR repertoire and involve activating KIRs. Blood 2013; 121: 2678–2688.

    Article  CAS  Google Scholar 

  15. Khakoo SI, Rajalingam R, Shum BP, Weidenbach K, Flodin L, Muir DG et al. Rapid evolution of NK cell receptor systems demonstrated by comparison of chimpanzees and humans. Immunity 2000; 12: 687–698.

    Article  CAS  Google Scholar 

  16. Flores AC, Marcos CY, Paladino N, Capucchio M, Theiler G, Arruvito L et al. KIR genes polymorphism in Argentinean Caucasoid and Amerindian populations. Tissue Antigens 2007; 69: 568–576.

    Article  CAS  Google Scholar 

  17. Middleton D, Gonzalez A, Gilmore PM . Studies on the expression of the deleted KIR2DS4*003 gene product and distribution of KIR2DS4 deleted and nondeleted versions in different populations. Hum Immunol 2007; 68: 128–134.

    Article  CAS  Google Scholar 

  18. Svejgaard A, Ryder LP . HLA and disease associations: detecting the strongest association. Tissue Antigens 1994; 43: 18–27.

    Article  CAS  Google Scholar 

  19. Colonna M, Borsellino G, Falco M, Ferrara GB, Strominger JL . HLA-C is the inhibitory ligand that determines dominant resistance to lysis by NK1- and NK2-specific natural killer cells. Proc Natl Acad Sci USA 1993; 90: 12000–12004.

    Article  CAS  Google Scholar 

  20. Wagtmann N, Rajagopalan S, Winter CC, Peruzzi M, Long EO . Killer cell inhibitory receptors specific for HLA-C and HLA-B identified by direct binding and by functional transfer. Immunity 1995; 3: 801–809.

    Article  CAS  Google Scholar 

  21. Pende D, Marcenaro S, Falco M, Martini S, Bernardo ME, Montagna D et al. Anti-leukemia activity of alloreactive NK cells in KIR ligand-mismatched haploidentical HSCT for pediatric patients: evaluation of the functional role of activating KIR and redefinition of inhibitory KIR specificity. Blood 2009; 113: 3119–3129.

    Article  CAS  Google Scholar 

  22. Schonberg K, Sribar M, Enczmann J, Fischer JC, Uhrberg M . Analyses of HLA-C-specific KIR repertoires in donors with group A and B haplotypes suggest a ligand-instructed model of NK cell receptor acquisition. Blood 2011; 117: 98–107.

    Article  Google Scholar 

  23. Graef T, Moesta AK, Norman PJ, Abi-Rached L, Vago L, Older Aguilar AM et al. KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C. J Exp Med 2009; 206: 2557–2572.

    Article  CAS  Google Scholar 

  24. Pesce S, Carlomagno S, Moretta A, Sivori S, Marcenaro E . Uptake of CCR7 by KIR2DS4(+) NK Cells is induced upon recognition of certain HLA-C alleles. J Immunol Res 2015; 2015: 754373.

    Article  Google Scholar 

  25. Holm SJ, Sakuraba K, Mallbris L, Wolk K, Stahle M, Sanchez FO . Distinct HLA-C/KIR genotype profile associates with guttate psoriasis. J Invest Dermatol 2005; 125: 721–730.

    Article  CAS  Google Scholar 

  26. Luszczek W, Manczak M, Cislo M, Nockowski P, Wisniewski A, Jasek M et al. Gene for the activating natural killer cell receptor, KIR2DS1, is associated with susceptibility to psoriasis vulgaris. Hum Immunol 2004; 65: 758–766.

    Article  CAS  Google Scholar 

  27. Williams F, Meenagh A, Sleator C, Cook D, Fernandez-Vina M, Bowcock AM et al. Activating killer cell immunoglobulin-like receptor gene KIR2DS1 is associated with psoriatic arthritis. Hum Immunol 2005; 66: 836–841.

    Article  CAS  Google Scholar 

  28. Momot T, Koch S, Hunzelmann N, Krieg T, Ulbricht K, Schmidt RE et al. Association of killer cell immunoglobulin-like receptors with scleroderma. Arthritis Rheum 2004; 50: 1561–1565.

    Article  CAS  Google Scholar 

  29. Yen JH, Moore BE, Nakajima T, Scholl D, Schaid DJ, Weyand CM et al. Major histocompatibility complex class I-recognizing receptors are disease risk genes in rheumatoid arthritis. J Exp Med 2001; 193: 1159–1167.

    Article  CAS  Google Scholar 

  30. Majorczyk E, Pawlik A, Gendosz D, Kusnierczyk P . Presence of the full-length KIR2DS4 gene reduces the chance of rheumatoid arthritis patients to respond to methotrexate treatment. BMC Musculoskelet Disord 2014; 15: 256.

    Article  Google Scholar 

  31. Legaz I, Lopez-Alvarez MR, Campillo JA, Moya-Quiles MR, Bolarin JM, de la Pena J et al. KIR gene mismatching and KIR/C ligands in liver transplantation: consequences for short-term liver allograft injury. Transplantation 2013; 95: 1037–1044.

    Article  CAS  Google Scholar 

  32. Katz G, Gazit R, Arnon TI, Gonen-Gross T, Tarcic G, Markel G et al. MHC class I-independent recognition of NK-activating receptor KIR2DS4. J Immunol 2004; 173: 1819–1825.

    Article  CAS  Google Scholar 

  33. Merino A, Malhotra R, Morton M, Mulenga J, Allen S, Hunter E et al. Impact of a functional KIR2DS4 allele on heterosexual HIV-1 transmission among discordant Zambian couples. J Infect Dis 2011; 203: 487–495.

    Article  CAS  Google Scholar 

  34. Liberal R, Vergani D, Mieli-Vergani G . Update on autoimmune hepatitis. J Clin Transl Hepatol 2015; 3: 42–52.

    Article  Google Scholar 

  35. Pillarisetty VG, Katz SC, Bleier JI, Shah AB, Dematteo RP . Natural killer dendritic cells have both antigen presenting and lytic function and in response to CpG produce IFN-gamma via autocrine IL-12. J Immunol 2005; 174: 2612–2618.

    Article  CAS  Google Scholar 

  36. Czaja AJ, Carpenter HA . Sensitivity, specificity, and predictability of biopsy interpretations in chronic hepatitis. Gastroenterology 1993; 105: 1824–1832.

    Article  CAS  Google Scholar 

  37. Kelly A, Fahey R, Fletcher JM, Keogh C, Carroll AG, Siddachari R et al. CD141(+) myeloid dendritic cells are enriched in healthy human liver. J Hepatol 2014; 60: 135–142.

    Article  CAS  Google Scholar 

  38. Middleton D, Williams F, Halfpenny IA . KIR genes. Transpl Immunol 2005; 14: 135–142.

    Article  CAS  Google Scholar 

  39. Maxwell LD, Williams F, Gilmore P, Meenagh A, Middleton D . Investigation of killer cell immunoglobulin-like receptor gene diversity: II. KIR2DS4. Hum Immunol 2004; 65: 613–621.

    Article  CAS  Google Scholar 

  40. Cereb N, Maye P, Lee S, Kong Y, Yang SY . Locus-specific amplification of HLA class I genes from genomic DNA: locus-specific sequences in the first and third introns of HLA-A, -B, and -C alleles. Tissue Antigens 1995; 45: 1–11.

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank Derek Middleton for his help with the initial genotyping of the KIR genes. This work was supported by research grants from ANPCYT PICT BICENTENARIO 2010 No. 0392, PICTO-GLAXO SMITH KLINE 2011 No. 0031 and Fundación de Asistencia Social del Hospital de Clínicas.

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Correspondence to L Fainboim.

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Podhorzer, A., Paladino, N., Cuarterolo, M. et al. The early onset of type 1 autoimmune hepatitis has a strong genetic influence: role of HLA and KIR genes. Genes Immun 17, 187–192 (2016). https://doi.org/10.1038/gene.2016.7

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