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Nucleotide sequence variation within the human tyrosine kinase B neurotrophin receptor gene: association with antisocial alcohol dependence

The Pharmacogenomics Journal volume 7, pages 368–379 (2007)Cite this article

Abstract

To identify sequence variants in genes that may have roles in neuronal responses to alcohol, we resequenced the 5′ region of tyrosine kinase B neurotrophin receptor gene (NTRK2) and determined linkage disequilibrium (LD) values, haplotype structure, and performed association analyses using 43 single nucleotide polymorphisms (SNPs) covering the entire NTRK2 region in a Finnish Caucasian sample of 229 alcohol-dependent subjects with antisocial personality disorder (ASPD) and 287 healthy controls. Individually, three SNPs were associated with alcohol dependence and alcohol abuse (AD) (P-value from 0.0019 to 0.0059, significance level was set at P⩽0.01 corrected for multiple testing), whereas a common 18 locus haplotype within the largest LD block of NTRK2, a 119-kb region containing the 5′ flanking region and exons 1–15, was marginally overrepresented in control subjects compared to AD individuals (global P=0.057). Taken together, these results support a role for the NTRK2 gene in addiction in a Caucasian population with AD and a subtype of ASPD.

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Acknowledgements

This study was supported by intramural research grant Z01-AA00325 from the National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health (RHL).

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Authors and Affiliations

  1. Sections on Molecular Genetics and Human Genetics, Laboratory of Neurogenetics, National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD, USA

    K Xu, T R Anderson, K M Neyer, N Lamparella, G Jenkins, Z Zhou, Q Yuan & R H Lipsky

  2. Department of Psychiatry, University of Helsinki, Finland

    M Virkkunen

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  1. K Xu
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  2. T R Anderson
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  3. K M Neyer
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  4. N Lamparella
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Corresponding author

Correspondence to R H Lipsky.

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Web Resources

The URLs for data presented herein are as follows:

dbSNP, http://www.ncbi.nlm.nih.gov/SNP

Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim

HapMap Project, http://www.hapmap.org

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Xu, K., Anderson, T., Neyer, K. et al. Nucleotide sequence variation within the human tyrosine kinase B neurotrophin receptor gene: association with antisocial alcohol dependence. Pharmacogenomics J 7, 368–379 (2007). https://doi.org/10.1038/sj.tpj.6500430

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