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| Open AccessBronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes
- Maneesh Bhargava
- , Kevin Viken
- & Chris Wendt
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| Open AccessGenetic and functional characterization of disease associations explains comorbidity
- Carlota Rubio-Perez
- , Emre Guney
- & Baldo Oliva
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| Open AccessIsoelectric point-based fractionation by HiRIEF coupled to LC-MS allows for in-depth quantitative analysis of the phosphoproteome
- Elena Panizza
- , Rui M. M. Branca
- & Janne Lehtiö
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| Open AccessUrinary metabolomics reveals the therapeutic effect of HuangQi Injections in cisplatin-induced nephrotoxic rats
- Chang-Yin Li
- , Hui-Ting Song
- & Wen-Zheng Ju
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| Open AccessResolving phylogenetic relationships of Delphacini and Tropidocephalini (Hemiptera: Delphacidae: Delphacinae) as inferred from four genetic loci
- Yi-Xin Huang
- , Li-Fang Zheng
- & Dao-Zheng Qin
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| Open AccessA Systems Genetics Approach Identified GPD1L and its Molecular Mechanism for Obesity in Human Adipose Tissue
- Hao He
- , Dianjianyi Sun
- & Hong-wen Deng
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| Open AccessLncRNAs2Pathways: Identifying the pathways influenced by a set of lncRNAs of interest based on a global network propagation method
- Junwei Han
- , Siyao Liu
- & Xia Li
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| Open AccessUnified Alignment of Protein-Protein Interaction Networks
- Noël Malod-Dognin
- , Kristina Ban
- & Nataša Pržulj
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| Open AccessExcitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells
- Gregor Mönke
- , Elena Cristiano
- & Alexander Loewer
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| Open AccessPestalotiopsis and allied genera from Camellia, with description of 11 new species from China
- Fang Liu
- , Lingwei Hou
- & Lei Cai
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| Open AccessSystems approach to characterize the metabolism of liver cancer stem cells expressing CD133
- Wonhee Hur
- , Jae Yong Ryu
- & Seung Kew Yoon
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| Open AccessIntegrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle
- Lingzhao Fang
- , Goutam Sahana
- & Peter Sørensen
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| Open AccessSimultaneously measuring multiple protein interactions and their correlations in a cell by Protein-interactome Footprinting
- Si-Wei Luo
- , Zhi Liang
- & Jia-Rui Wu
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| Open AccessFrequency-phase analysis of resting-state functional MRI
- Gadi Goelman
- , Rotem Dan
- & Robert Jech
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| Open AccessProteomic analysis and cross species comparison of casein fractions from the milk of dairy animals
- Xiaxia Wang
- , Xiaowei Zhao
- & Guanglong Cheng
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| Open AccessContext-independent essential regulatory interactions for apoptosis and hypertrophy in the cardiac signaling network
- Jun Hyuk Kang
- , Ho-Sung Lee
- & Kwang-Hyun Cho
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| Open AccessHuman enterovirus 71 protein interaction network prompts antiviral drug repositioning
- Lu Han
- , Kang Li
- & Shengqi Wang
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| Open AccessGenome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1
- Suhyung Cho
- , Min-Sik Kim
- & Byung-Kwan Cho
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| Open AccessAcetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway
- Brice Enjalbert
- , Pierre Millard
- & Fabien Létisse
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| Open AccessSystems biology analysis of drivers underlying hallmarks of cancer cell metabolism
- Daniel C. Zielinski
- , Neema Jamshidi
- & Bernhard O. Palsson
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| Open AccessQuantifying the relative contributions of different solute carriers to aggregate substrate transport
- Mehdi Taslimifar
- , Lalita Oparija
- & Victoria Makrides
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| Open AccessAltered Pathway Analyzer: A gene expression dataset analysis tool for identification and prioritization of differentially regulated and network rewired pathways
- Abhinav Kaushik
- , Shakir Ali
- & Dinesh Gupta
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| Open AccessTargeting pathogen metabolism without collateral damage to the host
- Jurgen R. Haanstra
- , Albert Gerding
- & Barbara M. Bakker
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| Open AccessEstablishment of a integrative multi-omics expression database CKDdb in the context of chronic kidney disease (CKD)
- Marco Fernandes
- & Holger Husi
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| Open AccessKnowledge-Guided Bioinformatics Model for Identifying Autism Spectrum Disorder Diagnostic MicroRNA Biomarkers
- Li Shen
- , Yuxin Lin
- & Bairong Shen
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| Open AccessNetDiff – Bayesian model selection for differential gene regulatory network inference
- Thomas Thorne
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| Open AccessIdentification of critical paralog groups with indispensable roles in the regulation of signaling flow
- Dezso Modos
- , Johanne Brooks
- & Katalin Lenti
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| Open AccessBordetella pertussis outer membrane vesicle vaccine confers equal efficacy in mice with milder inflammatory responses compared to a whole-cell vaccine
- René H. M. Raeven
- , Jolanda Brummelman
- & Bernard Metz
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| Open AccessGraphlet-based Characterization of Directed Networks
- Anida Sarajlić
- , Noël Malod-Dognin
- & Nataša Pržulj
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| Open AccessA systems biology approach to defining regulatory mechanisms for cartilage and tendon cell phenotypes
- A. J. Mueller
- , S. R. Tew
- & E. G. Canty-Laird
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| Open AccessExpression of immunoproteasome genes is regulated by cell-intrinsic and –extrinsic factors in human cancers
- Alexandre Rouette
- , Assya Trofimov
- & Claude Perreault
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| Open AccessSystems Pharmacology Dissection of the Integrated Treatment for Cardiovascular and Gastrointestinal Disorders by Traditional Chinese Medicine
- Wenjuan Zhang
- , Qin Tao
- & Yonghua Wang
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| Open AccessQuantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation
- Ella Nukarinen
- , Thomas Nägele
- & Wolfram Weckwerth
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| Open AccessSystems Level Analysis of the Yeast Osmo-Stat
- Soheil Rastgou Talemi
- , Carl-Fredrik Tiger
- & Jörg Schaber
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| Open AccessIn-Depth Characterization and Validation of Human Urine Metabolomes Reveal Novel Metabolic Signatures of Lower Urinary Tract Symptoms
- Ling Hao
- , Tyler Greer
- & Lingjun Li
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| Open AccessSystems view of adipogenesis via novel omics-driven and tissue-specific activity scoring of network functional modules
- Isar Nassiri
- , Rosario Lombardo
- & Corrado Priami
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| Open AccessDandruff is associated with the conjoined interactions between host and microorganisms
- Zhijue Xu
- , Zongxiu Wang
- & Menghui Zhang
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| Open AccessDissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks
- Sneha Nishtala
- , Yaseswini Neelamraju
- & Sarath Chandra Janga
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| Open AccessPrioritizing functional phosphorylation sites based on multiple feature integration
- Qingyu Xiao
- , Benpeng Miao
- & Yixue Li
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| Open AccessIntegration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis
- Bhanwar Lal Puniya
- , Deepika Kulshreshtha
- & Srinivasan Ramachandran
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| Open AccessResponse of Human Osteoblast to n-HA/PEEK—Quantitative Proteomic Study of Bio-effects of Nano-Hydroxyapatite Composite
- Minzhi Zhao
- , Haiyun Li
- & Shicheng Wei
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| Open AccessDeciphering the Potential Pharmaceutical Mechanism of Chinese Traditional Medicine (Gui-Zhi-Shao-Yao-Zhi-Mu) on Rheumatoid Arthritis
- Lin Huang
- , Qi Lv
- & Chengping Wen
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| Open AccessNew strategy for drug discovery by large-scale association analysis of molecular networks of different species
- Bo Zhang
- , Yingxue Fu
- & Yonghua Wang
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| Open AccessSystems-Pharmacology Dissection of Traditional Chinese Medicine Compound Saffron Formula Reveals Multi-scale Treatment Strategy for Cardiovascular Diseases
- Jianling Liu
- , Jiexin Mu
- & Yonghua Wang
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| Open AccessA network analysis of cofactor-protein interactions for analyzing associations between human nutrition and diseases
- Marie Pier Scott-Boyer
- , Sébastien Lacroix
- & Corrado Priami
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| Open AccessLarge molecular systems landscape uncovers T cell trapping in human skin cancer
- Reyk Hillert
- , Anne Gieseler
- & Walter Schubert
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| Open AccessNetwork-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections
- Zhenhong Jiang
- , Xiaobao Dong
- & Ziding Zhang
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| Open AccessQuantitative analysis of changes in the phosphoproteome of maize induced by the plant hormone salicylic acid
- Liuji Wu
- , Xiuli Hu
- & Yanhui Chen
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| Open AccessThe transcriptional landscape of dorsal root ganglia after sciatic nerve transection
- Shiying Li
- , Chengbin Xue
- & Xiaosong Gu