Reverse engineering articles within Scientific Reports

Featured

• Article
  15 November 2023 | Open Access

  Trehalose metabolism coordinates transcriptional regulatory control and metabolic requirements to trigger the onset of cassava storage root initiation

  • Nattavat Sukko
  • , Saowalak Kalapanulak
  •  & Treenut Saithong

• Article
  18 February 2022 | Open Access

  Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor

  • Andrea Zorro-Aranda
  • , Juan Miguel Escorcia-Rodríguez
  •  & Julio Augusto Freyre-González

• Article
  18 June 2021 | Open Access

  Modeling the metabolic profile of Mytilus edulis reveals molecular signatures linked to gonadal development, sex and environmental site

  • Jaanika Kronberg
  • , Jonathan J. Byrne
  •  & Francesco Falciani

• Article
  12 April 2021 | Open Access

  Topological clustering of regulatory genes confers pathogenic tolerance to cassava brown streak virus (CBSV) in cassava

  • Thanakorn Jaemthaworn
  • , Saowalak Kalapanulak
  •  & Treenut Saithong

• Article
  25 September 2019 | Open Access

  Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection

  • Abhijeet R. Sonawane
  • , Liang Tian
  •  & Yang-Yu Liu

• Article
  29 August 2019 | Open Access

  Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering

  • Tomoya Mori
  • , Haruka Takaoka
  •  & Wataru Fujibuchi

• Article
  01 November 2018 | Open Access

  Impact of measurement noise, experimental design, and estimation methods on Modular Response Analysis based network reconstruction

  • Caterina Thomaseth
  • , Dirk Fey
  •  & Boris N. Kholodenko

• Article
  03 August 2018 | Open Access

  Fitting mathematical models of biochemical pathways to steady state perturbation response data without simulating perturbation experiments

  • Tapesh Santra

• Article
  23 August 2017 | Open Access

  Altitude control in honeybees: joint vision-based learning and guidance

  • Geoffrey Portelli
  • , Julien R. Serres
  •  & Franck Ruffier

• Article
  13 March 2017 | Open Access

  Enlightening discriminative network functional modules behind Principal Component Analysis separation in differential-omic science studies

  • Sara Ciucci
  • , Yan Ge
  •  & Carlo Vittorio Cannistraci

• Article
  16 December 2016 | Open Access

  NetDiff – Bayesian model selection for differential gene regulatory network inference

  • Thomas Thorne

• Article
  24 October 2016 | Open Access

  Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data

  • Hui Liu
  • , Fan Zhang
  •  & Jie Zheng

• Article
  29 June 2016 | Open Access

  Network Modeling Identifies Patient-specific Pathways in Glioblastoma

  • Nurcan Tuncbag
  • , Pamela Milani
  •  & Ernest Fraenkel

• Article
  11 February 2016 | Open Access

  Gene regulatory network inference using fused LASSO on multiple data sets

  • Nooshin Omranian
  • , Jeanne M. O. Eloundou-Mbebi
  •  & Zoran Nikoloski

• Article
  28 March 2013 | Open Access

  Long-term strain improvements accumulate mutations in regulatory elements responsible for hyper-production of cellulolytic enzymes

  • Guodong Liu
  • , Lei Zhang
  •  & Yinbo Qu