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| Open Accessmicro-RNAs dependent regulation of DNMT and HIF1α gene expression in thrombotic disorders
- Aatira Vijay
- , Prabhash Kumar Jha
- & Bhuvnesh Kumar
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| Open AccessWidespread PERK-dependent repression of ER targets in response to ER stress
- Nir Gonen
- , Niv Sabath
- & Reut Shalgi
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| Open AccessEvolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
- Adrian I. Campos
- & Julio A. Freyre-González
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| Open AccessInferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
- Swapnil Kumar
- , Kumari Snehkant Lata
- & Jayashankar Das
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| Open AccessImpact of measurement noise, experimental design, and estimation methods on Modular Response Analysis based network reconstruction
- Caterina Thomaseth
- , Dirk Fey
- & Boris N. Kholodenko
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| Open AccessStructural robustness of mammalian transcription factor networks reveals plasticity across development
- J. L. Caldu-Primo
- , E. R. Alvarez-Buylla
- & J. Davila-Velderrain
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| Open AccessPlasma proteomics reveals gestational age-specific responses to mechanical ventilation and identifies the mechanistic pathways that initiate preterm lung injury
- Prue M. Pereira-Fantini
- , Sean G. Byars
- & David G. Tingay
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| Open AccessReprogramming, oscillations and transdifferentiation in epigenetic landscapes
- Bivash Kaity
- , Ratan Sarkar
- & Mithun K. Mitra
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| Open AccessInferring a nonlinear biochemical network model from a heterogeneous single-cell time course data
- Yuki Shindo
- , Yohei Kondo
- & Yasushi Sako
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| Open AccessIntegrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility
- Nasheeman Ashraf
- , Swaraj Basu
- & Subhra Chakraborty
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| Open AccessGene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity
- Álvaro Chiner-Oms
- , Fernando González-Candelas
- & Iñaki Comas
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| Open AccessNetwork Motifs Capable of Decoding Transcription Factor Dynamics
- Zongmao Gao
- , Siheng Chen
- & Chao Tang
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| Open AccessdynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data
- Vân Anh Huynh-Thu
- & Pierre Geurts
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| Open AccessITGB1-dependent upregulation of Caveolin-1 switches TGFβ signalling from tumour-suppressive to oncogenic in prostate cancer
- Teijo Pellinen
- , Sami Blom
- & Miguel A. del Pozo
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| Open AccessNetwork of proteins, enzymes and genes linked to biomass degradation shared by Trichoderma species
- Maria Augusta Crivelente Horta
- , Jaire Alves Ferreira Filho
- & Anete Pereira de Souza
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| Open AccessImproving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes
- Jigar S. Desai
- , Ryan C. Sartor
- & Colleen J. Doherty
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| Open AccessSystematic identification of novel regulatory interactions controlling biofilm formation in the bacterium Escherichia coli
- Gerardo Ruiz Amores
- , Aitor de las Heras
- & Rafael Silva-Rocha
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| Open AccessStochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level
- Chen Jia
- , Peng Xie
- & Michael Q. Zhang
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| Open AccessA novel miRNA analysis framework to analyze differential biological networks
- Ankush Bansal
- , Tiratha Raj Singh
- & Rajinder Singh Chauhan
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| Open AccessDifferential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs
- Markus Drag
- , Ruta Skinkyté-Juskiené
- & Haja N. Kadarmideen
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| Open AccessThe Schistosoma mansoni genome encodes thousands of long non-coding RNAs predicted to be functional at different parasite life-cycle stages
- Elton J. R. Vasconcelos
- , Lucas F. daSilva
- & Sergio Verjovski-Almeida
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| Open AccessComprehensive transcriptome mining of the direct conversion of mesodermal cells
- Bijan Akbari
- , Ping Wee
- & Abdulshakour Mohammadnia
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| Open AccessThe global view of mRNA-related ceRNA cross-talks across cardiovascular diseases
- Chao Song
- , Jian Zhang
- & Hongli Sun
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| Open AccessLogic programming reveals alteration of key transcription factors in multiple myeloma
- Bertrand Miannay
- , Stéphane Minvielle
- & Carito Guziolowski
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| Open AccessMachine Learning-Assisted Network Inference Approach to Identify a New Class of Genes that Coordinate the Functionality of Cancer Networks
- Mehrab Ghanat Bari
- , Choong Yong Ung
- & Hu Li
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| Open AccessDiscovery of Novel Human Gene Regulatory Modules from Gene Co-expression and Promoter Motif Analysis
- Shisong Ma
- , Michael Snyder
- & Savithramma P. Dinesh-Kumar
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| Open AccessNetwork model predicts that CatSper is the main Ca2+ channel in the regulation of sea urchin sperm motility
- Jesús Espinal-Enríquez
- , Daniel Alejandro Priego-Espinosa
- & Gustavo Martínez-Mekler
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| Open AccessReconstruction of Complex Directional Networks with Group Lasso Nonlinear Conditional Granger Causality
- Guanxue Yang
- , Lin Wang
- & Xiaofan Wang
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| Open AccessRevealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655
- Sang Woo Seo
- , Ye Gao
- & Bernhard O. Palsson
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| Open AccessComplementary transcriptomic and proteomic analyses reveal regulatory mechanisms of milk protein production in dairy cows consuming different forages
- Wenting Dai
- , Qiong Chen
- & Hongyun Liu
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| Open AccessThe combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
- Eugenio Azpeitia
- , Stalin Muñoz
- & Luis Mendoza
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| Open AccessHigh-throughput single-cell analysis for the proteomic dynamics study of the yeast osmotic stress response
- Rongfei Zhang
- , Haiyu Yuan
- & Chunxiong Luo
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| Open AccessDissecting the brown adipogenic regulatory network using integrative genomics
- Rachana N. Pradhan
- , Johannes J. Bues
- & Bart Deplancke
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| Open AccessRelaxation oscillations and hierarchy of feedbacks in MAPK signaling
- Marek Kochańczyk
- , Paweł Kocieniewski
- & Tomasz Lipniacki
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| Open AccessThe pan-cancer pathological regulatory landscape
- Matias M. Falco
- , Marta Bleda
- & Joaquín Dopazo
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| Open AccessNetDiff – Bayesian model selection for differential gene regulatory network inference
- Thomas Thorne
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| Open AccessDevelopmental Reprogramming in Mesenchymal Stromal Cells of Human Subjects with Idiopathic Pulmonary Fibrosis
- Diptiman Chanda
- , Ashish Kurundkar
- & Victor J. Thannickal
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| Open AccessComparative genomic analysis of novel Acinetobacter symbionts: A combined systems biology and genomics approach
- Vipin Gupta
- , Shazia Haider
- & Rup Lal
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| Open AccessIntegrative analyses shed new light on human ribosomal protein gene regulation
- Xin Li
- , Yiyu Zheng
- & Xiaoman Li
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| Open AccessAnalysis of the dynamic co-expression network of heart regeneration in the zebrafish
- Sophie Rodius
- , Anna Fournier
- & Francisco Azuaje
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| Open AccessDissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks
- Sneha Nishtala
- , Yaseswini Neelamraju
- & Sarath Chandra Janga
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| Open AccessControl of complex networks requires both structure and dynamics
- Alexander J. Gates
- & Luis M. Rocha
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| Open AccessExploring regulatory networks of miR-96 in the developing inner ear
- Morag A. Lewis
- , Annalisa Buniello
- & Karen P. Steel
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| Open AccessA systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation
- Zhana Duren
- & Yong Wang
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| Open AccessComplementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling
- Hadas Zur
- , Ranen Aviner
- & Tamir Tuller
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| Open AccessGene regulatory network inference using fused LASSO on multiple data sets
- Nooshin Omranian
- , Jeanne M. O. Eloundou-Mbebi
- & Zoran Nikoloski
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| Open AccessPredicting the impact of promoter variability on regulatory outputs
- Naomi N. Kreamer
- , Rob Phillips
- & James Q. Boedicker
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| Open AccessDetection of gene communities in multi-networks reveals cancer drivers
- Laura Cantini
- , Enzo Medico
- & Michele Caselle
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| Open AccessTopological robustness analysis of protein interaction networks reveals key targets for overcoming chemotherapy resistance in glioma
- Hátylas Azevedo
- & Carlos Alberto Moreira-Filho