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| Open AccessSystems biology reveals reprogramming of the S-nitroso-proteome in the cortical and striatal regions of mice during aging process
- Maryam Kartawy
- , Igor Khaliulin
- & Haitham Amal
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| Open AccessTranscriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
- Prithvi Singh
- , Archana Sharma
- & Mansoor Ali Syed
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| Open AccessNovel protein pathways in development and progression of pulmonary sarcoidosis
- Maneesh Bhargava
- , K. J. Viken
- & L. A. Maier
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| Open AccessA carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota
- Juhani Aakko
- , Sami Pietilä
- & Arno Hänninen
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| Open AccessIdentification of a unique temporal signature in blood and BAL associated with IPF progression
- Katy C. Norman
- , David N. O’Dwyer
- & Kelly B. Arnold
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| Open AccessA comparative chemogenic analysis for predicting Drug-Target Pair via Machine Learning Approaches
- Aman Chandra Kaushik
- , Aamir Mehmood
- & Dong-Qing Wei
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| Open AccessFinnish Parkinson’s disease study integrating protein-protein interaction network data with exome sequencing analysis
- Ari Siitonen
- , Laura Kytövuori
- & Kari Majamaa
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| Open AccessDeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map
- Fatema Tuz Zohora
- , M. Ziaur Rahman
- & Ming Li
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| Open AccessCharacterization and Identification of Lysine Succinylation Sites based on Deep Learning Method
- Kai-Yao Huang
- , Justin Bo-Kai Hsu
- & Tzong-Yi Lee
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| Open AccessRefinements of LC-MS/MS Spectral Counting Statistics Improve Quantification of Low Abundance Proteins
- Ha Yun Lee
- , Eunhee G. Kim
- & Eugene C. Yi
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| Open AccessComputational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
- Jonathan Fine
- , Rachel Lackner
- & Gaurav Chopra
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| Open AccessDeeper Profiles and Cascaded Recurrent and Convolutional Neural Networks for state-of-the-art Protein Secondary Structure Prediction
- Mirko Torrisi
- , Manaz Kaleel
- & Gianluca Pollastri
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| Open AccessHarnessing the tissue and plasma lncRNA-peptidome to discover peptide-based cancer biomarkers
- Sajib Chakraborty
- , Geoffroy Andrieux
- & Melanie Boerries
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| Open AccessSPECTRUM – A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data
- Abdul Rehman Basharat
- , Kanzal Iman
- & Safee Ullah Chaudhary
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| Open AccessComputational identification of protein-protein interactions in model plant proteomes
- Ziyun Ding
- & Daisuke Kihara
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| Open AccessVariable protein homeostasis in housekeeping and non-housekeeping pathways under mycotoxins stress
- Yu Sun
- , Jikai Wen
- & Yiqun Deng
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| Open AccessCryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes
- Johan Busselez
- , Francisco Javier Chichón
- & José-Maria Carazo
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| Open AccessPrediction and characterisation of lantibiotic structures with molecular modelling and molecular dynamics simulations
- Hirak Jyoti Chakraborty
- , Aditi Gangopadhyay
- & Abhijit Datta
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| Open AccessdeMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS
- Seungjin Na
- , Jae-Jin Lee
- & Eunok Paek
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| Open AccessDifferential epithelial and stromal protein profiles in cone and non-cone regions of keratoconus corneas
- Gary Hin-Fai Yam
- , Matthias Fuest
- & Jodhbir S. Mehta
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| Open AccessImmunoinformatic and systems biology approaches to predict and validate peptide vaccines against Epstein–Barr virus (EBV)
- Arif Ali
- , Abbas Khan
- & Dong-Qing Wei
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| Open AccessPhoglyStruct: Prediction of phosphoglycerylated lysine residues using structural properties of amino acids
- Abel Chandra
- , Alok Sharma
- & Tatsuhiko Tsunoda
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| Open AccessExploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches
- Aqsa Ikram
- , Tahreem Zaheer
- & Hussnain Ahmed Janjua
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| Open AccessThe potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
- Manas Ranjan Dikhit
- , Sushmita Das
- & Pradeep Das
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| Open AccessPredicting proteome dynamics using gene expression data
- Krzysztof Kuchta
- , Joanna Towpik
- & Maga Rowicka
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| Open AccessAn interaction network driven approach for identifying biomarkers for progressing cervical intraepithelial neoplasia
- Shikha Suman
- & Ashutosh Mishra
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| Open AccessPPInS: a repository of protein-protein interaction sitesbase
- Vicky Kumar
- , Suchismita Mahato
- & Mahesh Kulharia
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| Open AccessGenome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress
- Muhammad Waseem
- , Fiaz Ahmad
- & Zhengguo Li
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| Open AccessGM-CSF driven myeloid cells in adipose tissue link weight gain and insulin resistance via formation of 2-aminoadipate
- Deanna L. Plubell
- , Alexandra M. Fenton
- & Nathalie Pamir
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| Open AccessQuantitative proteomic characterization of cellular pathways associated with altered insulin sensitivity in skeletal muscle following high-fat diet feeding and exercise training
- Maximilian Kleinert
- , Benjamin L. Parker
- & Lykke Sylow
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| Open AccessExploring Leptospiral proteomes to identify potential candidates for vaccine design against Leptospirosis using an immunoinformatics approach
- Kumari Snehkant Lata
- , Swapnil Kumar
- & Jayashankar Das
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| Open AccessNIPS, a 3D network-integrated predictor of deleterious protein SAPs, and its application in cancer prognosis
- Bo Wang
- , Jing Li
- & Jing Li
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| Open AccessSystemic and specific effects of antihypertensive and lipid-lowering medication on plasma protein biomarkers for cardiovascular diseases
- Stefan Enroth
- , Varun Maturi
- & Ulf Gyllensten
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| Open AccessA proteomic insight into vitellogenesis during tick ovary maturation
- Marina Amaral Xavier
- , Lucas Tirloni
- & Carlos Termignoni
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| Open AccessA Novel Modeling in Mathematical Biology for Classification of Signal Peptides
- Asma Ehsan
- , Khalid Mahmood
- & Kuo-Chen Chou
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| Open AccessDefining tissue proteomes by systematic literature review
- Sarah A. Hibbert
- , Matiss Ozols
- & Michael J. Sherratt
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| Open AccessFeatures of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons
- Nicholas J. Fowler
- , Christopher F. Blanford
- & Jim Warwicker
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| Open AccessVisualizing the GPCR Network: Classification and Evolution
- Geng-Ming Hu
- , Te-Lun Mai
- & Chi-Ming Chen
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| Open AccessCombining membrane proteomics and computational three-way pathway analysis revealed signalling pathways preferentially regulated in human iPSCs and human ESCs
- Wei-Sheng Tien
- , Pei-Mien Chen
- & Kun-Pin Wu
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| Open AccessA proteome view of structural, functional, and taxonomic characteristics of major protein domain clusters
- Chia-Tsen Sun
- , Austin W. T. Chiang
- & Ming-Jing Hwang
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| Open AccessRemodeling of the Streptococcus mutans proteome in response to LrgAB and external stresses
- Sang-Joon Ahn
- , Tongjun Gu
- & Kelly C. Rice
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| Open AccessA novel quantification-driven proteomic strategy identifies an endogenous peptide of pleiotrophin as a new biomarker of Alzheimer’s disease
- Tobias Skillbäck
- , Niklas Mattsson
- & Johan Gobom
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| Open AccessModeling the Kinetics of Integrin Receptor Binding to Hepatic Extracellular Matrix Proteins
- Shanice V. Hudson
- , Christine E. Dolin
- & Gavin E. Arteel
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| Open AccessSecretome profiles of immortalized dental follicle cells using iTRAQ-based proteomic analysis
- Lei Dou
- , Yan Wu
- & Ping Ji
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| Open AccessEnriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins
- Farideh Halakou
- , Emel Sen Kilic
- & Attila Gursoy
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| Open AccessIdentifying Human SIRT1 Substrates by Integrating Heterogeneous Information from Various Sources
- Zichao Zhai
- , Ming Tang
- & Tingting Li
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| Open AccessRevealing protein networks and gene-drug connectivity in cancer from direct information
- Xian-Li Jiang
- , Emmanuel Martinez-Ledesma
- & Faruck Morcos
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| Open AccessIn-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing values
- Jinxia Wang
- , Liwei Li
- & Cheng Chang