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| Open AccessComplete Anopheles funestus mitogenomes reveal an ancient history of mitochondrial lineages and their distribution in southern and central Africa
- Christine M. Jones
- , Yoosook Lee
- & Giovanna Carpi
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| Open AccessEurope-wide reassessment of Dictyocoela (Microsporidia) infecting native and invasive amphipods (Crustacea): molecular versus ultrastructural traits
- Karolina Bacela-Spychalska
- , Piotr Wróblewski
- & Mykola Ovcharenko
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| Open AccessEvolution of oncogenic signatures of mutation hotspots in tyrosine kinases supports the atavistic hypothesis of cancer
- Weiran Chen
- , Yixue Li
- & Zhen Wang
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| Open AccessEvolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes
- Gurmeet Kaur
- , Lakshminarayan M. Iyer
- & L. Aravind
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| Open AccessThe Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models
- Daniel Magee
- , Jesse E. Taylor
- & Matthew Scotch
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| Open AccessGenome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species
- Poonam Pant
- , Zahra Iqbal
- & Samir V. Sawant
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| Open AccessPhylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi
- Sumit Mukherjee
- , Matan Drory Retwitzer
- & Supratim Sengupta
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| Open AccessGenetic connectivity from the Arctic to the Antarctic: Sclerolinum contortum and Nicomache lokii (Annelida) are both widespread in reducing environments
- Mari H. Eilertsen
- , Magdalena N. Georgieva
- & Hans T. Rapp
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| Open AccessPhylogeny and evolution of Müllerian mimicry in aposematic Dilophotes: evidence for advergence and size-constraints in evolution of mimetic sexual dimorphism
- Michal Motyka
- , Lucie Kampova
- & Ladislav Bocak
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| Open AccessDiversity and evolution of four-domain voltage-gated cation channels of eukaryotes and their ancestral functional determinants
- Ilya Pozdnyakov
- , Olga Matantseva
- & Sergei Skarlato
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| Open AccessWhole genome diversity of inherited chromosomally integrated HHV-6 derived from healthy individuals of diverse geographic origin
- Marco Telford
- , Arcadi Navarro
- & Gabriel Santpere
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| Open AccessComparative genomic and transcriptomic analyses of Family-1 UDP glycosyltransferase in three Brassica species and Arabidopsis indicates stress-responsive regulation
- Hafiz Mamoon Rehman
- , Muhammad Amjad Nawaz
- & Soo In Lee
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Article
| Open AccessUse of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia
- Cameron Buckley
- , Brian M. Forde
- & David M. Whiley
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| Open AccessSweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses
- Thorsten R. Klingen
- , Susanne Reimering
- & Alice C. McHardy
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| Open AccessDeciphering the emergence, genetic diversity and evolution of classical swine fever virus
- Liliam Rios
- , Liani Coronado
- & Lester J. Pérez
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| Open AccessEpidemiology, pathology and identification of Colletotrichum including a novel species associated with avocado (Persea americana) anthracnose in Israel
- Gunjan Sharma
- , Marcel Maymon
- & Stanley Freeman
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| Open AccessReconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data
- Bing Feng
- , Yu Lin
- & Jijun Tang
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| Open AccessPhylogenetic analysis of the metazoan carotenoid oxygenase superfamily: a new ancestral gene assemblage of BCO-like (BCOL) proteins
- Eugenia Poliakov
- , Joseph Soucy
- & T. Michael Redmond
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| Open AccessChemosensing of honeybee parasite, Varroa destructor: Transcriptomic analysis
- Nurit Eliash
- , Nitin K. Singh
- & Victoria Soroker
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| Open AccessViral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika
- Stéphane Aris-Brosou
- , Neke Ibeh
- & Jessica Noël
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| Open AccessThe molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters
- Juan Ángel Patiño-Galindo
- , Manoli Torres-Puente
- & Fernando González-Candelas
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| Open AccessSystems Identification and Characterization of Cell Wall Reassembly and Degradation Related Genes in Glycine max (L.) Merill, a Bioenergy Legume
- Muhammad Amjad Nawaz
- , Hafiz Mamoon Rehman
- & Gyuhwa Chung
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| Open AccessComputational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae)
- Snehal D. Karpe
- , Surbhi Dhingra
- & R. Sowdhamini
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| Open AccessProkaryotic and Highly-Repetitive WD40 Proteins: A Systematic Study
- Xue-Jia Hu
- , Tuan Li
- & Yun-Dong Wu
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| Open AccessDiversification dynamics of rhynchostomatian ciliates: the impact of seven intrinsic traits on speciation and extinction in a microbial group
- Peter Vďačný
- , Ľubomír Rajter
- & Mann Kyoon Shin
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| Open AccessCharacterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida
- Antony T. Vincent
- , Valérie E. Paquet
- & Steve J. Charette
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| Open AccessIn silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria
- Akanksha Rajput
- & Manoj Kumar
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| Open AccessIdentification and analysis of mtDNA genomes attributed to Finns reveal long-stagnant demographic trends obscured in the total diversity
- Sanni Översti
- , Päivi Onkamo
- & Jukka U. Palo
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| Open AccessConformational plasticity and evolutionary analysis of the myotilin tandem Ig domains
- Vid Puž
- , Miha Pavšič
- & Kristina Djinović-Carugo
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| Open AccessMulti-drug resistant Klebsiella pneumoniae strains circulating in hospital setting: whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations
- Eleonora Cella
- , Massimo Ciccozzi
- & Silvia Angeletti
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| Open AccessDistinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis
- Wenning Zheng
- , Mui Fern Tan
- & Siew Woh Choo
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| Open AccessProtein Sequence Comparison Based on Physicochemical Properties and the Position-Feature Energy Matrix
- Lulu Yu
- , Yusen Zhang
- & Matthias Dehmer
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| Open AccessUsing nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic
- Gonzalo Yebra
- , Emma B. Hodcroft
- & Zisis Kozlakidis
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| Open AccessGenome-wide Analysis of WD40 Protein Family in Human
- Xu-Dong Zou
- , Xue-Jia Hu
- & Yun-Dong Wu
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| Open AccessAssessment of virulence potential of uncharacterized Enterococcus faecalis strains using pan genomic approach – Identification of pathogen–specific and habitat-specific genes
- Utpal Bakshi
- , Munmun Sarkar
- & Chitra Dutta
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| Open AccessComparative phylogenomic analysis provides insights into TCP gene functions in Sorghum
- Aleena Francis
- , Namrata Dhaka
- & Rita Sharma
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| Open AccessCollagen cross-linking: insights on the evolution of metazoan extracellular matrix
- Fernando Rodriguez-Pascual
- & David Anthony Slatter
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| Open AccessThe complete salmonid IGF-IR gene repertoire and its transcriptional response to disease
- Abdullah Alzaid
- , Samuel A. M. Martin
- & Daniel J. Macqueen
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| Open AccessA Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland
- Manon L. Ragonnet-Cronin
- , Mohaned Shilaih
- & Andrew J. Leigh Brown
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| Open AccessSubstrate prediction of Ixodes ricinus salivary lipocalins differentially expressed during Borrelia afzelii infection
- James J. Valdés
- , Alejandro Cabezas-Cruz
- & Patricia A. Nuttall
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| Open AccessEpidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada
- Wanhong Xu
- , Yohannes Berhane
- & Soren Alexandersen
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| Open AccessThe phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts
- Alessia Peviani
- , Jeroen Lastdrager
- & Berend Snel
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| Open AccessExploring lateral genetic transfer among microbial genomes using TF-IDF
- Yingnan Cong
- , Yao-ban Chan
- & Mark A. Ragan
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| Open AccessA novel alignment-free method for detection of lateral genetic transfer based on TF-IDF
- Yingnan Cong
- , Yao-ban Chan
- & Mark A. Ragan
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| Open AccessAlignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer
- Guillaume Bernard
- , Cheong Xin Chan
- & Mark A. Ragan
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| Open AccessPhylogenetic analysis of β-xylanase SRXL1 of Sporisorium reilianum and its relationship with families (GH10 and GH11) of Ascomycetes and Basidiomycetes
- Jorge Álvarez-Cervantes
- , Gerardo Díaz-Godínez
- & Miguel Angel Anducho-Reyes
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| Open AccessDivergence time estimates and the evolution of major lineages in the florideophyte red algae
- Eun Chan Yang
- , Sung Min Boo
- & Hwan Su Yoon
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| Open AccessEffects of memory on the shapes of simple outbreak trees
- Giacomo Plazzotta
- , Christopher Kwan
- & Caroline Colijn
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| Open AccessAbsence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms
- Om Singh Rathore
- , Alexandra Faustino
- & Rui Gonçalo Martinho