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| Open AccessExploring the mechanism of Yixinyin for myocardial infarction by weighted co-expression network and molecular docking
- Mengqi Huo
- , Lina Ma
- & Guoguo Liu
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| Open AccessCapturing hidden regulation based on noise change of gene expression level from single cell RNA-seq in yeast
- Thoma Itoh
- & Takashi Makino
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| Open AccessStructural and functional analysis of somatic coding and UTR indels in breast and lung cancer genomes
- Jing Chen
- & Jun-tao Guo
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| Open AccessTranscriptomic profiling and functional prediction reveal aberrant expression of circular RNAs during osteogenic differentiation in human umbilical cord mesenchymal stromal cells
- Cheng Su
- , Xiao Zheng
- & Wenchuan Chen
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| Open AccessGenomic epidemiology of rifampicin ADP-ribosyltransferase (Arr) in the Bacteria domain
- Sergio Morgado
- , Érica Fonseca
- & Ana Carolina Vicente
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| Open AccessComparative genome-wide analysis of WRKY, MADS-box and MYB transcription factor families in Arabidopsis and rice
- Muhammad-Redha Abdullah-Zawawi
- , Nur-Farhana Ahmad-Nizammuddin
- & Zeti-Azura Mohamed-Hussein
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| Open AccessSingle-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis
- Zhong-Yi Wang
- , Adrian Keogh
- & Florian Nigsch
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| Open AccessCellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy
- Nicholas D. Henkel
- , Marissa A. Smail
- & Rammohan Shukla
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| Open AccessA genetic risk score using human chromosomal-scale length variation can predict schizophrenia
- Christopher Toh
- & James P. Brody
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| Open AccessBiopsy bacterial signature can predict patient tissue malignancy
- Glenn Hogan
- , Julia Eckenberger
- & Mark Tangney
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| Open AccessGeneralized and social anxiety disorder interactomes show distinctive overlaps with striosome and matrix interactomes
- Kalyani B. Karunakaran
- , Satoko Amemori
- & Ken-ichi Amemori
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| Open AccessHigh-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome
- Julian R. Garneau
- , Véronique Legrand
- & Marc Monot
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| Open AccessMolecular characterization and cell type composition deconvolution of fibrosis in NAFLD
- Lorena Pantano
- , George Agyapong
- & Kathleen E. Corey
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| Open AccessGenotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populations
- Sridevi Padakanti
- , Khong-Loon Tiong
- & Chen-Hsiang Yeang
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| Open AccessTP53 isoform junction reads based analysis in malignant and normal contexts
- Suleyman Vural
- , Lun-Ching Chang
- & Dmitriy Sonkin
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| Open AccessMultilocus sequence analysis reveals genetic diversity in Staphylococcus aureus isolate of goat with mastitis persistent after treatment with enrofloxacin
- Richard Costa Polveiro
- , Manuela Maria Cavalcante Granja
- & Maria Aparecida Scatamburlo Moreira
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| Open AccessGenome-wide identification and analysis of the heat shock transcription factor family in moso bamboo (Phyllostachys edulis)
- Bin Huang
- , Zhinuo Huang
- & Kim Yrjälä
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| Open AccessReal-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing
- François Stüder
- , Jean-Louis Petit
- & Marco Antonio Mendoza-Parra
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| Open AccessAtypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba
- Sergio Alan Cervantes-Pérez
- , Lenin Yong-Villalobos
- & Luis Herrera-Estrella
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| Open AccessGenome-wide approaches for the identification of markers and genes associated with sugarcane yellow leaf virus resistance
- Ricardo José Gonzaga Pimenta
- , Alexandre Hild Aono
- & Anete Pereira de Souza
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| Open AccessImplication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling
- Yafei Lyu
- , Randy Zauhar
- & Mingyao Li
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| Open AccessAnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators
- Arno Meiler
- , Fabio Marchiano
- & Bianca H. Habermann
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| Open AccessThe first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas
- Tanvi Sharma
- , Nitesh Kumar Sharma
- & Sanjay Kumar
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| Open AccessPredicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning
- Marleen M. Nieboer
- , Luan Nguyen
- & Jeroen de Ridder
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| Open AccessBenchmarking germline CNV calling tools from exome sequencing data
- Veronika Gordeeva
- , Elena Sharova
- & Georgij Arapidi
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| Open AccessDeep learning identifies antigenic determinants of severe SARS-CoV-2 infection within T-cell repertoires
- John-William Sidhom
- & Alexander S. Baras
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| Open AccessTranscriptome profiling by combined machine learning and statistical R analysis identifies TMEM236 as a potential novel diagnostic biomarker for colorectal cancer
- Neha Shree Maurya
- , Sandeep Kushwaha
- & Ashutosh Mani
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| Open AccessAMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
- Michael Feldgarden
- , Vyacheslav Brover
- & William Klimke
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| Open AccessApplication of the random forest algorithm to Streptococcus pyogenes response regulator allele variation: from machine learning to evolutionary models
- Sean J. Buckley
- , Robert J. Harvey
- & Zack Shan
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| Open AccessTranscriptional response to prolonged perchlorate exposure in the methanogen Methanosarcina barkeri and implications for Martian habitability
- Rachel L. Harris
- , Andrew C. Schuerger
- & Tullis C. Onstott
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| Open AccessSARS-CoV-2 mutations in Brazil: from genomics to putative clinical conditions
- Luis Fernando Saraiva Macedo Timmers
- , Julia Vasconcellos Peixoto
- & Stefan Laufer
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| Open AccessCharacterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces
- Yuanqiang Zou
- , Xiaoqian Lin
- & Liang Xiao
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| Open AccessPredicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
- Carlos Wert-Carvajal
- , Rubén Sánchez-García
- & Arrate Muñoz-Barrutia
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| Open AccessImproved methods for RNAseq-based alternative splicing analysis
- Rebecca F. Halperin
- , Apurva Hegde
- & Nicholas J. Schork
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| Open AccessThe chemical defensome of five model teleost fish
- Marta Eide
- , Xiaokang Zhang
- & Anders Goksøyr
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Article
| Open AccessHaplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus
- Guilherme B. Dias
- , Musaad A. Altammami
- & Manee M. Manee
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| Open AccessIntra-host evolutionary dynamics of the hepatitis C virus among people who inject drugs
- Vincent Montoya
- , Anita Y. M. Howe
- & Jeffrey B. Joy
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| Open AccessGenomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields
- Luz K. Medina-Cordoba
- , Aroon T. Chande
- & I. King Jordan
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| Open AccessChromatin occupancy and target genes of the haematopoietic master transcription factor MYB
- Roza B. Lemma
- , Marit Ledsaak
- & Odd S. Gabrielsen
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Article
| Open AccessVEHiCLE: a Variationally Encoded Hi-C Loss Enhancement algorithm for improving and generating Hi-C data
- Max Highsmith
- & Jianlin Cheng
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| Open AccessTranscriptomic analysis to infer key molecular players involved during host response to NDV challenge in Gallus gallus (Leghorn & Fayoumi)
- Venkata Krishna Vanamamalai
- , Priyanka Garg
- & Shailesh Sharma
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| Open AccessIntegrated transcription factor profiling with transcriptome analysis identifies L1PA2 transposons as global regulatory modulators in a breast cancer model
- Jiayue-Clara Jiang
- , Joseph A. Rothnagel
- & Kyle R. Upton
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| Open AccessGenome-wide discovery of G-quadruplexes in barley
- H. Busra Cagirici
- , Hikmet Budak
- & Taner Z. Sen
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| Open AccessFamily-based gene-environment interaction using sequence kernel association test (FGE-SKAT) for complex quantitative traits
- Chao-Yu Guo
- , Reng-Hong Wang
- & Hsin-Chou Yang
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| Open AccessAn R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk
- Gabriel Jimenez-Dominguez
- , Patrice Ravel
- & Jacques Colinge
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| Open AccessShort and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma
- Hannah E. Roberts
- , Maria Lopopolo
- & David Buck
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Article
| Open AccessIdentifying gene expression patterns associated with drug-specific survival in cancer patients
- Bridget Neary
- , Jie Zhou
- & Peng Qiu
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| Open AccessPhylogenetic and genetic characterization of Treponema pallidum strains from syphilis patients in Japan by whole-genome sequence analysis from global perspectives
- Shingo Nishiki
- , Kenichi Lee
- & Makoto Ohnishi
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| Open AccessThe role of gene to gene interaction in the breast’s genomic signature of pregnancy
- Pedro J. Gutiérrez-Díez
- , Javier Gomez-Pilar
- & Jose Russo