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| Open AccessK-means quantization for a web-based open-source flow cytometry analysis platform
- Nathan Wong
- , Daehwan Kim
- & Irina M. Conboy
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| Open AccessSemi-automatic liver segmentation based on probabilistic models and anatomical constraints
- Doan Cong Le
- , Krisana Chinnasarn
- & Paramate Horkaew
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| Open AccessDrug design and repurposing with DockThor-VS web server focusing on SARS-CoV-2 therapeutic targets and their non-synonym variants
- Isabella A. Guedes
- , Leon S. C. Costa
- & Laurent E. Dardenne
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| Open AccessAn in silico deep learning approach to multi-epitope vaccine design: a SARS-CoV-2 case study
- Zikun Yang
- , Paul Bogdan
- & Shahin Nazarian
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| Open AccessBenchmarking of numerical integration methods for ODE models of biological systems
- Philipp Städter
- , Yannik Schälte
- & Paul L. Stapor
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| Open AccessOpenEP : an open-source simulator for electroporation-based tumor treatments- Matías Marino
- , Emmanuel Luján
- & Guillermo Marshall
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| Open AccessNeuromorphic on-chip recognition of saliva samples of COPD and healthy controls using memristive devices
- Pouya Soltani Zarrin
- , Finn Zahari
- & Christian Wenger
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| Open AccessMito Hacker: a set of tools to enable high-throughput analysis of mitochondrial network morphology
- Ali Rohani
- , Jennifer A. Kashatus
- & David F. Kashatus
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| Open AccessRaw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists
- D. N. U. Naranpanawa
- , C. H. W. M. R. B. Chandrasekara
- & A. U. Bandaranayake
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| Open Access3D reconstruction of coronary artery bifurcations from coronary angiography and optical coherence tomography: feasibility, validation, and reproducibility
- Wei Wu
- , Saurabhi Samant
- & Yiannis S. Chatzizisis
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| Open AccessMutational analysis on predicting the impact of high-risk SNPs in human secretary phospholipase A2 receptor (PLA2R1)
- Zoya Khalid
- & Omar Almaghrabi
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| Open AccessRecursive Consensus Clustering for novel subtype discovery from transcriptome data
- Pranali Sonpatki
- & Nameeta Shah
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| Open AccessHigh-Throughput Screening to Predict Chemical-Assay Interference
- Alexandre Borrel
- , Ruili Huang
- & Nicole C. Kleinstreuer
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| Open AccessmiRgo: integrating various off-the-shelf tools for identification of microRNA–target interactions by heterogeneous features and a novel evaluation indicator
- Yen-Wei Chu
- , Kai-Po Chang
- & Li‐Ching Hsieh
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| Open AccessCANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes
- Masroor Bayati
- , Hamid R. Rabiee
- & Hamid Alinejad-Rokny
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| Open AccessManatee: detection and quantification of small non-coding RNAs from next-generation sequencing data
- Joanna E. Handzlik
- , Spyros Tastsoglou
- & Artemis G. Hatzigeorgiou
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| Open AccessCosolvent Analysis Toolkit (CAT): a robust hotspot identification platform for cosolvent simulations of proteins to expand the druggable proteome
- Francesc Sabanés Zariquiey
- , João V. de Souza
- & Agnieszka K. Bronowska
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Article
| Open AccessMulti-tissue network analysis for drug prioritization in knee osteoarthritis
- Michael Neidlin
- , Smaragda Dimitrakopoulou
- & Leonidas G. Alexopoulos
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Article
| Open AccessScalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers
- Kanak Mahadik
- , Christopher Wright
- & Somali Chaterji
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Article
| Open AccessComputational chemoproteomics to understand the role of selected psychoactives in treating mental health indications
- Jonathan Fine
- , Rachel Lackner
- & Gaurav Chopra
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| Open AccessNGSReadsTreatment – A Cuckoo Filter-based Tool for Removing Duplicate Reads in NGS Data
- Antonio Sérgio Cruz Gaia
- , Pablo Henrique Caracciolo Gomes de Sá
- & Adonney Allan de Oliveira Veras
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| Open AccessSPECTRUM – A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data
- Abdul Rehman Basharat
- , Kanzal Iman
- & Safee Ullah Chaudhary
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| Open AccessGolden Mutagenesis: An efficient multi-site-saturation mutagenesis approach by Golden Gate cloning with automated primer design
- Pascal Püllmann
- , Chris Ulpinnis
- & Martin J. Weissenborn
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| Open AccessBlood Biochemistry Analysis to Detect Smoking Status and Quantify Accelerated Aging in Smokers
- Polina Mamoshina
- , Kirill Kochetov
- & Alex Zhavoronkov
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| Open AccessAn analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
- Chen Keasar
- , Liam J. McGuffin
- & Silvia N. Crivelli
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| Open AccessPan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes
- Allan Veras
- , Fabricio Araujo
- & Rommel Ramos
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| Open AccessGlobal analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance
- Pandiyan Muthuramalingam
- , Subramanian Radhesh Krishnan
- & Manikandan Ramesh
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| Open AccessATLANTIS - Attractor Landscape Analysis Toolbox for Cell Fate Discovery and Reprogramming
- Osama Shiraz Shah
- , Muhammad Faizyab Ali Chaudhary
- & Safee Ullah Chaudhary
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| Open AccessQFMatch: multidimensional flow and mass cytometry samples alignment
- Darya Y. Orlova
- , Stephen Meehan
- & Guenther Walther
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| Open AccessGO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
- Fabricio Almeida Araujo
- , Debmalya Barh
- & Rommel Thiago Juca Ramos
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| Open AccessA Novel Modeling in Mathematical Biology for Classification of Signal Peptides
- Asma Ehsan
- , Khalid Mahmood
- & Kuo-Chen Chou
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| Open AccessSmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
- Brian Long
- , Zhi Zhou
- & Hanchuan Peng
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Article
| Open AccessAccelerating next generation sequencing data analysis with system level optimizations
- Nagarajan Kathiresan
- , Ramzi Temanni
- & Rashid Al-Ali
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| Open AccessIdentifying protein complexes in PPI network using non-cooperative sequential game
- Ujjwal Maulik
- , Srinka Basu
- & Sumanta Ray
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| Open AccessElitist Binary Wolf Search Algorithm for Heuristic Feature Selection in High-Dimensional Bioinformatics Datasets
- Jinyan Li
- , Simon Fong
- & Kelvin K. L. Wong
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| Open AccessInteractive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates
- Johan Nyström-Persson
- , Yayoi Natsume-Kitatani
- & Kenji Mizuguchi
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| Open AccessSeqTU: A Web Server for Identification of Bacterial Transcription Units
- Xin Chen
- , Wen-Chi Chou
- & Ying Xu
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| Open AccessA 3D self-organizing multicellular epidermis model of barrier formation and hydration with realistic cell morphology based on EPISIM
- Thomas Sütterlin
- , Erika Tsingos
- & Niels Grabe
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| Open AccessBio-inspired benchmark generator for extracellular multi-unit recordings
- Sirenia Lizbeth Mondragón-González
- & Eric Burguière
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| Open AccessAn end-to-end software solution for the analysis of high-throughput single-cell migration data
- Paola Masuzzo
- , Lynn Huyck
- & Marleen Van Troys
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| Open AccessA cloud-based workflow to quantify transcript-expression levels in public cancer compendia
- PJ Tatlow
- & Stephen R. Piccolo
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| Open AccessSystematic Analysis of Drug Targets Confirms Expression in Disease-Relevant Tissues
- Vinod Kumar
- , Philippe Sanseau
- & Pankaj Agarwal
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| Open AccessPEPlife: A Repository of the Half-life of Peptides
- Deepika Mathur
- , Satya Prakash
- & Gajendra P. S. Raghava
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| Open AccessProcess-based design of dynamical biological systems
- Jovan Tanevski
- , Ljupčo Todorovski
- & Sašo Džeroski
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| Open AccessCardiovascular Disease Chemogenomics Knowledgebase-guided Target Identification and Drug Synergy Mechanism Study of an Herbal Formula
- Hai Zhang
- , Shifan Ma
- & Xiang-Qun Xie
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| Open AccessZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis
- Amit Kumar Gupta
- , Karambir Kaur
- & Manoj Kumar
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| Open AccessAssessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses
- M. Tangherlini
- , A. Dell’Anno
- & C. Corinaldesi
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| Open AccessEvolution of Genome Size in Asexual Digital Organisms
- Aditi Gupta
- , Thomas LaBar
- & Christoph Adami
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| Open AccessPrioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine
- Sudheer Gupta
- , Kumardeep Chaudhary
- & Gajendra P. S. Raghava